1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaaatcttctgattcctcttttatgtttgtaattttgtccctgctaatgacttgcactattaaatgcactttggctgggttttcagttgtgatagataaatttgttgtagGTATCGAATCACAGAGGGTGTAAACCTTCCATTCCGTGTTCTGCCGACAATCAAGGAATTGGGCCGAACACGCATGGAGATCAACGTGAAA
species | Zea mays |
transcript | GRMZM2G331032_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GAAAAGACAGTCAGTTTCGTGCCACCTGACGGTGAATTTGAGTTGATGAA GTATCGAATCACAGAGGGTGTAAACCTTCCATTCCGTGTTCTGCCGACAATEST: gi|6101968|gb|AW126438.1|AW126438
genomic: GAAAAGACAGTCAGTTTCGTGCCACCTGACGGTGAATTTGAGTTGATGAAgtaaatcttc ... tttgttgtagGTATCGAATCACAGAGGGTGTAAACCTTCCATTCCGTGTTCTGCCGACAAT
EST: GAGTTGATGAA GTATCGAATCACAGAGGGTGTAAACCTTCCATTCCGTGTTCTGCCGACAATEST: gi|31354959|gb|CD439316.1|CD439316
genomic: GAGTTGATGAAgtaaatcttc ... tttgttgtagGTATCGAATCACAGAGGGTGTAAACCTTCCATTCCGTGTTCTGCCGACAAT
EST: GAAAAGACAGTCAGTTTCGTGCCACCTGACGGTGAATTTGAGTTGATGAA GTATCGAATCACAGAGGGTGTAAACCTTCCATTCCGTGTTCTGCCGACAATEST: gi|91054998|gb|EB165416.1|EB165416
genomic: GAAAAGACAGTCAGTTTCGTGCCACCTGACGGTGAATTTGAGTTGATGAAgtaaatcttc ... tttgttgtagGTATCGAATCACAGAGGGTGTAAACCTTCCATTCCGTGTTCTGCCGACAAT
EST: GAAAAGACAGTCAGTTTCGTGCCACCTGACGGTGAATTTGAGTTGATGAA GTATCGAATCACAGAGGGTGTAAACCTTCCATTCCGTGTTCTGCCGACAATEST: gi|32935086|gb|CF039898.1|CF039898
genomic: GAAAAGACAGTCAGTTTCGTGCCACCTGACGGTGAATTTGAGTTGATGAAgtaaatcttc ... tttgttgtagGTATCGAATCACAGAGGGTGTAAACCTTCCATTCCGTGTTCTGCCGACAAT
EST: GAAAAGACAGTCAGTTTCGTGCCACCTGACGGTGAATTTGAGTTGATGAA GTATCGAATCACAGAGGGTGTAAACCTTCCATTCCGTGTTCTGCCGACAATEST: gi|6021406|gb|AW066334.1|AW066334
genomic: GAAAAGACAGTCAGTTTCGTGCCACCTGACGGTGAATTTGAGTTGATGAAgtaaatcttc ... tttgttgtagGTATCGAATCACAGAGGGTGTAAACCTTCCATTCCGTGTTCTGCCGACAAT
EST: AAAAAGACAGTCAGTTTCGTGCCACCTGACGGTGAATTTGAGTTGATGAA GTATCGAATCACAGAGGGTGTAAACCTTCCATTCCGTGTTCTGCCGACAAT
genomic: GAAAAGACAGTCAGTTTCGTGCCACCTGACGGTGAATTTGAGTTGATGAAgtaaatcttc ... tttgttgtagGTATCGAATCACAGAGGGTGTAAACCTTCCATTCCGTGTTCTGCCGACAAT
actattaaatgcactttggctgggttttcagttgtgatagataaatttgttgtagGTATCGAATCACAGAGGGTGTAAACCTTCCATTCCGTGTTCTGCCGACAATCAAGGAATTGGGCCGAACACGCATGGAGATCAACGTGAAA
atagataaatttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatcttctgattcctcttttatgtttgtaattttgtccctgctaatgacttgcactattaaatgcactttggctgggttttcagttgtgatagataaatttgttgtagGTATCGAATCACAGAGGGTGTAAACCTTCCATTCCGTGTTCTGCCGACAATCAAGGAATTGGGCCGAACACGCATGGAGATCAACGTGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA