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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcactccctctttctcagtctctgacatatacaaacggtgagcacgcacaagcactgactgaaagttaaacacatgattttgcagGTTGCGACTGACAAATGTATCATGGCATTCCTCTTCCTGATCGTTTTGGGTGTGATTGCTATCATTGTTGTCAAG

Basic information

species Zea mays
transcript GRMZM2G330650_T01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G330650_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os03g25390.1 (Oryza sativa), 3'ss of exon 8
gcactccc---tctttctcagtctctgacatatacaaacggtga-gcacgcacaagcactgactgaaagttaaacacatgattttgcagGTTGCGACTGACAAATGTATCATGGCATTCCTCTTCCTGATCGTTTTGGGTGTGATTGCTATCATTGTTGTCAAG
| || |||    || ||||   |     | |   |    | |   ||| |  || ||| |  |||||| || ||  |      ||||||||||| ||||||||||| || |||||||| || || ||||| ||||  ||||||||||| || |||||||| |||
gtacccccatccctctctcttccctctgcgtgcgcttgtgcttttgcatgtcca-gcagtacctgaaatttgaaatc-----cttgcagGTTGCAACTGACAAATGCATTATGGCATTGCTTTTTCTGATTGTTTGTGGTGTGATTGCAATTATTGTTGTTAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71774532|gb|DR972410.1|DR972410
EST:     ACTTCTCACTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAG                         GTTGCGACTGACAAATGTATCATGGCATTCCTCTTCCTGATCGTTTTGG
genomic: ACTTCTCACTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAGgcactccctc ... gattttgcagGTTGCGACTGACAAATGTATCATGGCATTCCTCTTCCTGATCGTTTTGG
EST: gi|60396385|gb|DN229254.1|DN229254
EST:     ACTTCTCACTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAG                         GTTGCGACTGACAAATGTATCATGGCATTCCTCTTCCTGATCGTTTTGGGT
genomic: ACTTCTCACTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAGgcactccctc ... gattttgcagGTTGCGACTGACAAATGTATCATGGCATTCCTCTTCCTGATCGTTTTGGGT
EST: gi|32866170|gb|CF005852.1|CF005852
EST:     ACTTCTCACTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAG                         GTTGCGACTGACAAATGTATCATGGCATTCCTCTTTCTGATCGTTTTGGGT
genomic: ACTTCTCACTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAGgcactccctc ... gattttgcagGTTGCGACTGACAAATGTATCATGGCATTCCTCTTCCTGATCGTTTTGGGT
EST: gi|71774531|gb|DR972409.1|DR972409
EST:     ACTTCTCCCTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAG                         GTTGCGACTGACAAATGTATCATGGCATTCCTCTTCCTGATCGTTTTGGGT
genomic: ACTTCTCACTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAGgcactccctc ... gattttgcagGTTGCGACTGACAAATGTATCATGGCATTCCTCTTCCTGATCGTTTTGGGT
EST: gi|148991480|gb|EE032993.2|EE032993
EST:     ACTTCTCCCTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAG                         GTTGCGACTGACAAATGTATCATGGCATTCCTCTTCCTGATCGTTTTGGGT
genomic: ACTTCTCACTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAGgcactccctc ... gattttgcagGTTGCGACTGACAAATGTATCATGGCATTCCTCTTCCTGATCGTTTTGGGT
EST: gi|50338100|gb|CO533226.1|CO533226
EST:     ACTTCTCACTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAG                         GTTGCGACTGACAAATGTATCATGGCATTCCTCTTCCTGATCGTTTTGGGT
genomic: ACTTCTCACTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAGgcactccctc ... gattttgcagGTTGCGACTGACAAATGTATCATGGCATTCCTCTTCCTGATCGTTTTGGGT
EST: gi|76286033|gb|DV025601.1|DV025601
EST:     ACTTCTCACTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAG                         GTTGCGACTGACAAATGTATCATGGCATTCCTCTTCCTGATCGTTTTGGGT
genomic: ACTTCTCACTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAGgcactccctc ... gattttgcagGTTGCGACTGACAAATGTATCATGGCATTCCTCTTCCTGATCGTTTTGGGT
EST: gi|21810005|gb|BQ668323.1|BQ668323
EST:     ACTTCTCACTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAG                         GTTGCGACTGACAAATGTATCATGGCATTCCTCTTTCTGATCGTTTTGGGT
genomic: ACTTCTCACTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAGgcactccctc ... gattttgcagGTTGCGACTGACAAATGTATCATGGCATTCCTCTTCCTGATCGTTTTGGGT
EST: gi|71442678|gb|DR823728.1|DR823728
EST:     ACTTCTCACTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAG                         GTTGCGACTGACAAATGTATCATGGCATTCCTCTTCCTGATCGTTTTGGGT
genomic: ACTTCTCACTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAGgcactccctc ... gattttgcagGTTGCGACTGACAAATGTATCATGGCATTCCTCTTCCTGATCGTTTTGGGT
EST: gi|60396054|gb|DN228924.1|DN228924
EST:     ACTTCTCACTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAG                         GTTGCGACTGACAAATGTATCATGGCATTCCTCTTCCTGATCGTTTTGGGT
genomic: ACTTCTCACTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAGgcactccctc ... gattttgcagGTTGCGACTGACAAATGTATCATGGCATTCCTCTTCCTGATCGTTTTGGGT
EST: gi|211141939|gb|FL417378.1|FL417378
EST:     ACTTCTCACTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAG                         GTTGCGACTGACAAATGTATCTTGGCATTCCTCTTCCTGATCGTTTTGGGT
genomic: ACTTCTCACTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAGgcactccctc ... gattttgcagGTTGCGACTGACAAATGTATCATGGCATTCCTCTTCCTGATCGTTTTGGGT
EST: gi|33467215|gb|CF244264.1|CF244264
EST:     ACTTCTCACTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAG                         GTTGCGACTGACAAATGTATCATGGCATTCCTCTTCCTGATCGTTTTGGGT
genomic: ACTTCTCACTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAGgcactccctc ... gattttgcagGTTGCGACTGACAAATGTATCATGGCATTCCTCTTCCTGATCGTTTTGGGT
EST: gi|87157738|gb|DY402527.1|DY402527
EST:     ACTTCTCACTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAG                         GTTGCGACTGACAAATGTATCATGGCATTCCTCTTTCTGATCGTTTTGGGT
genomic: ACTTCTCACTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAGgcactccctc ... gattttgcagGTTGCGACTGACAAATGTATCATGGCATTCCTCTTCCTGATCGTTTTGGGT
EST: gi|89754547|gb|DY685289.1|DY685289
EST:     ACTTCTCCCTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAG                         GTTGCGACTGACAAATGTATCATGGCATTCCTCTTCCTGATCGTTTTGGGT
genomic: ACTTCTCACTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAGgcactccctc ... gattttgcagGTTGCGACTGACAAATGTATCATGGCATTCCTCTTCCTGATCGTTTTGGGT
EST: gi|7135269|gb|AW498001.1|AW498001
EST:     ACTTCTCACTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAG                         GTTGCGACTGACAAATGTATCATGGCATTCCTCTTTCTGATCGTTTTGGGT
genomic: ACTTCTCACTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAGgcactccctc ... gattttgcagGTTGCGACTGACAAATGTATCATGGCATTCCTCTTCCTGATCGTTTTGGGT
EST: gi|7135591|gb|AW498164.1|AW498164
EST:     ACTTCTCACTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAG                         GTTGCGACTGACAAATGTATCATGGCATTCCTCTTTCTGATCGTTTTGGGT
genomic: ACTTCTCACTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAGgcactccctc ... gattttgcagGTTGCGACTGACAAATGTATCATGGCATTCCTCTTCCTGATCGTTTTGGGT
EST: gi|18166041|gb|BM335880.1|BM335880
EST:     ACTTCTCACTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAG                         GTTGCGACTGACAAATGTATCATGGCATTCCTCTTCCTGATCGTTTTGGGT
genomic: ACTTCTCACTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAGgcactccctc ... gattttgcagGTTGCGACTGACAAATGTATCATGGCATTCCTCTTCCTGATCGTTTTGGGT
EST: gi|78074383|gb|DV502817.1|DV502817
EST:     ACTTCTCACTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAG                         GTTGCGACTGACAAATGTATCATGGCATTCCTCTTCCTGATCGTTTTGGGT
genomic: ACTTCTCACTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAGgcactccctc ... gattttgcagGTTGCGACTGACAAATGTATCATGGCATTCCTCTTCCTGATCGTTTTGGGT
EST: gi|86468443|gb|DY234813.1|DY234813
EST:     AGGAGATTGGTCGCCAG                         GTTGCGACTGACAAATGTATCATGGCATTCCTTTTCCTGATCGTTTTGGGT
genomic: AGGAGATTGGTCGCCAGgcactccctc ... gattttgcagGTTGCGACTGACAAATGTATCATGGCATTCCTCTTCCTGATCGTTTTGGGT
EST: gi|78122352|gb|DV540736.1|DV540736
EST:     ACTTCTCACTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAG                         GTTGCGACTGACAAATGTATCATGGCATTCCTCTTCCTGATCGTTTTGGGT
genomic: ACTTCTCACTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAGgcactccctc ... gattttgcagGTTGCGACTGACAAATGTATCATGGCATTCCTCTTCCTGATCGTTTTGGGT
EST: gi|71306394|gb|DR789339.1|DR789339
EST:     ACTTTTCCCTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAG                         GTTGCGACTGACAAATGTATCATGGCATTCCTCTTCCTGATCGTTTTGGGT
genomic: ACTTCTCACTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAGgcactccctc ... gattttgcagGTTGCGACTGACAAATGTATCATGGCATTCCTCTTCCTGATCGTTTTGGGT
EST: gi|60337886|gb|DN204859.1|DN204859
EST:     ACTTCTCACTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAG                         GTTGCGACTGACAAATGTATCATGGCATTCCTCTTCCTGATCGTTTTGGGT
genomic: ACTTCTCACTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAGgcactccctc ... gattttgcagGTTGCGACTGACAAATGTATCATGGCATTCCTCTTCCTGATCGTTTTGGGT
EST: gi|110510919|gb|EE019261.1|EE019261
EST:     ACTTCTCACTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAG                         GTTGCGACTGACAAATGTATCATGGCATTCCTCTTCCTGATCGTTTTGGGT
genomic: ACTTCTCACTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAGgcactccctc ... gattttgcagGTTGCGACTGACAAATGTATCATGGCATTCCTCTTCCTGATCGTTTTGGGT
EST: gi|148961350|gb|EE012080.2|EE012080
EST:     CTTCTCACCTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAG                         GTTGCGACTGACAAATGTATCAT
genomic: CTTCTCAC-TGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAGgcactccctc ... gattttgcagGTTGCGACTGACAAATGTATCAT
EST: gi|76019098|gb|DT946268.1|DT946268
EST:     ACTTCTCACTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAG                         GTTGCGACTGACAAATGTATCATGGCATTCCTCTTCCTGATCGTTTTGGGT
genomic: ACTTCTCACTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAGgcactccctc ... gattttgcagGTTGCGACTGACAAATGTATCATGGCATTCCTCTTCCTGATCGTTTTGGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaaacggtgagcacgcacaagcactgactgaaagttaaacacatgattttgcagGTTGCGACTGACAAATGTATCATGGCATTCCTCTTCCTGATCGTTTTGGGTGTGATTGCTATCATTGTTGTCAAG
                      cactgac  putative branch site (score: 2)
                               aaagttaaa  TA-rich tract