Sequence
atgc intronic sequence ATGC exonic sequencegtgagcaccctgtacttttaacctctgcagacattttgcattttttaaaagcaaacatagctgtaaattgttattaacgggttgcttttttattgtaagTTGCTCGATTTGAGTGGCATTCTCACTGTGTTTTTCTGTGGTATCGTAATGTCACACTATACTTGGCAAAATGTAACAGAAAGTTCGAGGGTCACAACCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G311165_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os11g42790.1 (Oryza sativa), 3'ss of exon 7
gtgagcaccctgtacttttaacctctgcagacattttgcattttttaaaagc-------aaacatagctgtaa-------attgttattaacgggttgcttttttattgtaagTTGCTCGATTTGAGTGGCATTCTCACTGTGTTTTTCTGTGGTATCGTAATGTCACACTATACTTGGCAAAATGTAACAGAAAGTTCGAGGGTCACAACCA
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gtaagcaccctgtactattagcatc-atatagatcctgcagatttgagcaatgtcagctaaatttaattgtaatggataatctgatattaacctgtttctttttg--tggcagTTGCTTGATTTGAGTGGTATTCTTACGGTGTTCTTCTGTGGTATTGTAATGTCGCACTATACCTGGCATAATGTAACAGAGAGTTCCAGGGTCACAACCA
upper sequence: GRMZM2G311165_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA19G42900.1 (Glycine max), 3'ss of exon 8
gtgagcaccctgtacttttaacctctgcagacattttgcattttttaaaagcaaacatagctgtaaattgttattaacgggttgcttttttattgtaagTTGCTCGATT--------TGAGTGGCATTCTCACTGTGTTTTTCTGTGGTATCGTAATGTCACACTATACTTGGCAAAATGTAACAGAAAGTTCGAGGGTCACAACCA
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gtaagttttaaagaacttcagaaatattttgtagagtatgtctttttgagctc--tatatctattttttcttgtgaaagggttctgatatatctacaagttctgcagTTATGGTATCTGAGTGGCATTCTTACTGTATTCTTCTGTGGGATTGTTATGTCTCATTATACTTGGCATAATGTGACTGAGAGCTCGAGAATAACTACCA
upper sequence: GRMZM2G311165_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA03G40290.1 (Glycine max), 3'ss of exon 8
-------------------gtgagcaccctgtacttttaacctctgcagacattttgcattttttaaaagcaaacatagctgtaaattgttattaacgggttgcttttttattgta-agTTGCTCGATTTGAGTGGCATTCTCACTGTGTTTTTCTGTGGTATCGTAATGTCACACTATACTTGGCAAAATGTAACAGAAAGTTCGAGGGTCACAACCA
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gtaagttttaaagaacttcagaaatgttctgtacagtatgtcttttttga-gctctatatctattttttgttgtggta-cattcattaatcattaacgggtt-ctgatatattctgcagTTATGGTATCTGAGTGGCATTCTCACTGTATTCTTCTGTGGGATTGTTATGTCTCATTATACTTGGCATAATGTGACTGAGAGCTCGAGAATAACTACCA
upper sequence: GRMZM2G311165_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA10G30020.1 (Glycine max), 3'ss of exon 9
gtgagcaccctgtacttttaacctctgcagacattttgcattttttaaaagcaaacatagctgtaaattgttattaacgggttgcttttttattgtaagTTGCTCGATTTGAGTGGCATTCTCACTGTGTTTTTCTGTGGTATCGTAATGTCACACTATACTTGGCAAAATGTAACAGAAAGTTCGAGGGTCACAACCA
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----gtaagttgtaa---agaattttagtaatgttttatggatgctgtcaacatttgtcgttg--acatgatgctgatgtatc-tacatctgttgca-gTTATGTTATCTGAGTGGCATTCTCACTGTATTCTTTTGTGGTATTGTTATGTCTCATTATACCTGGCATAACGTGACCGAGAGTTCAAGAATCACTACCA
upper sequence: GRMZM2G311165_T01 (Zea mays), 3'ss of exon 8
lower sequence: AT5G27150.1 (Arabidopsis thaliana), 3'ss of exon 9
gtgagcaccctgtacttttaacctctgcagacattttgcattttttaaaagcaaacatagctgtaaattgttattaacgggttgcttttttattgtaagTTGCTCGATTTGAGTGGCATTCTCACTGTGTTTTTCTGTGGTATCGTAATGTCACACTATACTTGGCAAAATGTAACAGAAAGTTCGAGGGTCACAACCA
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------gttagattcttttaaataacacgaacatattcattcagttgcattcaaacacaaat-tatattgatgtta------tattaatttggttgcagCTTTTCGACTTGAGCGGTATCCTCACTGTGTTTTTCTGTGGTATTGTGATGTCCCATTACACATGGCACAATGTAACGGAGAGCTCAAGAATAACAACAA
upper sequence: GRMZM2G311165_T01 (Zea mays), 3'ss of exon 8
lower sequence: Vv07s0104g01280.t01 (Vitis vinifera), 3'ss of exon 8
------------------------------------------------------------gtgagcaccctgtacttttaacctctgcagacattttgcattttttaaaagcaaacatagctgtaaattgttattaacgggttg----cttttttattgta-agTTGCTCGATTTGAGTGGCATTCTCACTGTGTTTTTCTGTGGTATCGTAATGTCACACTATACTTGGCAAAATGTAACAGAAAGTTCGAGGGTCACAACCA
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gtaagatttctttctacccttcaagcacctttataagaatctcatcaagttctgtttgaaatatacaaggactatcatcatccaattctg-tgctttataaggattattatcatccacttctgtgctttactgatagtgtttataaattctgttcatcatccagTTGTTCTATTTAAGTGGCATTCTCACTGTATTCTTTTGCGGGATTGTCATGTCACACTACACCTGGCATAACGTGACTGAAAGTTCAAGAGTCACCACAA
upper sequence: GRMZM2G311165_T01 (Zea mays), 3'ss of exon 8
lower sequence: Vv14s0030g00710.t01 (Vitis vinifera), 3'ss of exon 8
--------------------gtgagcac--cctgtacttttaacctctgcagacatt-----ttgcattt---tttaaaagcaaacatagc-----tgtaaattgttattaacg--ggttgctttt-ttattgta-agTTGCTCGATTTGAGTGGCATTCTCACTGTGTTTTTCTGTGGTATCGTAATGTCACACTATACTTGGCAAAATGTAACAGAAAGTTCGAGGGTCACAACCA
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gtaagatttcttttaacttcttgggcacttccctggcccctgttgtctattggcattgagtgttctatttagattcaacagtagatatatcaatcatttaaagtctttccattgttagtaactttggttgtcctgcagCTATTCTATTTGAGTGGCATTCTCACGGTATTTTTCTGTGGGATTGTAATGTCCCATTACACGTGGCACAATGTTACAGAGAGTTCAAGAGTCACTACCAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211187216|gb|FL054038.1|FL054038EST: AAGTTTCCATTATGATGCTAATGGCTTATTTATCTTACATGCTAGCTGAA TTGCTCGATTTGAGTGGCATTCTCACTGTGTTTTTCTGCGGTATCGTAATG
genomic: AAGTTTCCATTATGATGCTAATGGCTTATTTATCTTACATGCTAGCTGAAgtgagcaccc ... ttattgtaagTTGCTCGATTTGAGTGGCATTCTCACTGTGTTTTTCTGTGGTATCGTAATG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttaaaagcaaacatagctgtaaattgttattaacgggttgcttttttattgtaagTTGCTCGATTTGAGTGGCATTCTCACTGTGTTTTTCTGTGGTATCGTAATGTCACACTATACTTGGCAAAATGTAACAGAAAGTTCGAGGGTCACAACCA
tattaac putative branch site (score: 1)
ttgctttttt putative PPT
tgtaaattgttattaa TA-rich tract