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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtttaggattttattacatgatctatggctttattactgaatatctgtctgttgcttcccaacttttttttctttccagGAATCTGGAGATGGGAAATGCCTGTGCCCAGCTGGTTTCCGAGGGGACGGCGTTAAAAAATGTGAAGGTGCTGTATTTAGTAATATAATTTGCCTCATCA

Basic information

species Zea mays
transcript GRMZM2G303631_T02
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G303631_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os10g20630.1 (Oryza sativa), 3'ss of exon 8
gtaggtttaggattttatta-----catgatctatggctttattactgaatatctgtctgt-tgcttcccaacttttttttctttccagGAATCTGGAGATGGGAAATGCCTGTGCCCAGCTGGTTTCCGAGGGGACGGCGTTAAAAAATGTGAAGGTGCTGTATTTAGTAATATAATTTGCCTCATCA
|||| ||| || ||| ||||      | ||| ||  |  | || |     |||||  |||| | || |  || | ||| ||  ||||||||||| ||| |||| ||||||| ||| |||||||||||||||||||| || ||||||||||||||||                                 
gtagttttgggctttaattagtgcataagatatactgaataatgataagttatcttactgtgttctacttaaatgtttatt--ttccagGAATCAGGAAATGGAAAATGCCAGTGTCCAGCTGGTTTCCGAGGGGATGGTGTTAAAAAATGTGAAG---------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91054221|gb|EB164639.1|EB164639
EST:     GAGGATGTTGGCATGAAACTCGCAACGGAAAAACATTCTCTGCTTGCCAG                         GAATCTGGAGATGGGAAATGCCTGTGCCCAGCTGGTTTCCGAGGGGACGGC
genomic: GAGGATGTTGGCATGAAACTCGCAACGGAAAAACATTCTCTGCTTGCCAGgtaggtttag ... ttctttccagGAATCTGGAGATGGGAAATGCCTGTGCCCAGCTGGTTTCCGAGGGGACGGC
EST: gi|211449602|gb|FL033163.1|FL033163
EST:     GAGGATGTTGGCATGAAACTCGCAACGGAAAAACATTCTCTGCTTGCCAG                         GAATCTGGAGATGGGAAATGCCTGTGCCCAGCTGGTTT
genomic: GAGGATGTTGGCATGAAACTCGCAACGGAAAAACATTCTCTGCTTGCCAGgtaggtttag ... ttctttccagGAATCTGGAGATGGGAAATGCCTGTGCCCAGCTGGTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atggctttattactgaatatctgtctgttgcttcccaacttttttttctttccagGAATCTGGAGATGGGAAATGCCTGTGCCCAGCTGGTTTCCGAGGGGACGGCGTTAAAAAATGTGAAGGTGCTGTATTTAGTAATATAATTTGCCTCATCA
                   tctgtctgttgcttcc  CT-rich tract
     tttattactgaatat  TA-rich tract