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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...actaaccatcatgaattgaacatatagctcatgatgtcagtctcctgaacagaagcgagaaatttaggatcgttattgtggactgttcactccaatgcagGTTTTGCATCCACAATCGATGAGACCTGCTAGAGAAGGTGATATTCCAGTTAGGGTTAAGAATTCATACAACCCTAAAGCTCCAGGCACCCTTATTACCA

Basic information

species Zea mays
transcript GRMZM2G300862_T01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G300862_T05 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os01g70300.2 (Oryza sativa), 3'ss of exon 7
actaaccatcatgaattgaacatat-agctcatgatgtcagtctcctgaacagaagcgagaaatttaggatcgttattgtggactgtt-cactccaatgcagGTTTTGCATCCACAATCGATGAGACCTGCTAGAGAAGGTGATATTCCAGTTAGGGTTAAGAATTCATACAACCCTAAAGCTCCAGGCACCCTTATTACCA
  | |  |   |    | |  || | |  | | | ||    || |  |   ||||  ||||| |||  | |  |  |  || | ||||   |||||    |||| || ||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| || || |
--tgataagggtttgctcactatgtcaatttaagttgctcttcgcacgtttagaaaagagaacttttagttgatagtaatgcattgttgtgctccatgatagGTATTACATCCACAATCTATGAGACCTGCTAGAGAAGGTGATATACCAGTCAGGGTTAAGAATTCGTACAACCCTAAAGCTCCAGGCACCCTGATCACTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89759013|gb|DY687973.1|DY687973
EST:     CATACTTAACATTTGAAGAGGCCACAGAACTTGCTTATTTTGGTGCTCAG                         GTTTTGCATCCACAATCGATGAGACCTGCTAGAGAAGGTGATATTCCAGTT
genomic: CATACTTAACATTTGAAGAGGCCACAGAACTTGCTTATTTTGGTGCTCAGgtactctttc ... tccaatgcagGTTTTGCATCCACAATCGATGAGACCTGCTAGAGAAGGTGATATTCCAGTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaacagaagcgagaaatttaggatcgttattgtggactgttcactccaatgcagGTTTTGCATCCACAATCGATGAGACCTGCTAGAGAAGGTGATATTCCAGTTAGGGTTAAGAATTCATACAACCCTAAAGCTCCAGGCACCCTTATTACCA
                                        ttcactcc  CT-rich tract
            agaaattta  TA-rich tract