1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gtttataggctccatgtcttgaactgatatggctttaaaatttattggccatatcccaggtcccagaagctgaccactttttgtttttttttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAAGGTAGAATTCGGGCTACCTGACCTGGAGGGCCGTACCCAAATCTTTAAG
species | Zea mays |
transcript | GRMZM2G181359_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG GCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAAEST: gi|32857562|gb|CD997243.1|CD997243
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
EST: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG GCCTGGTACATTGGATCCTGCACTTCAGCGTCCTGGTCGTCTGGACAGAAAEST: gi|67019132|gb|CO447881.1|CO447881
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
EST: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG GCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAAEST: gi|148930441|gb|EE284947.2|EE284947
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
EST: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG GCCTGATACATEST: gi|31363534|gb|CD447891.1|CD447891
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACAT
EST: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG GCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAAEST: gi|67021842|gb|CO450591.1|CO450591
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
EST: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG GCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAAEST: gi|6031320|gb|AW076177.1|AW076177
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
EST: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG GCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAAEST: gi|110202151|gb|EC884048.1|EC884048
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
EST: AAGAGGGAACATCAAAGTTCTTCATGGCCACTAATAG GCCTGATCCATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAAEST: gi|148933232|gb|EC876883.2|EC876883
genomic: AAGAGGGAACATCAAAGTTC-TCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
EST: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTTTCATGGCCACTAATAG GCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAAEST: gi|5607920|gb|AI901587.1|AI901587
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
EST: TGATGCAAGAGGGAACATCAAAGTTTTCATGGCCCCTAATAG GCCTGATACATTGGATCCTGCACTTTTGCGTCCTGGTCGTCTGGACAGAAAEST: gi|148981607|gb|EE027765.2|EE027765
genomic: TGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
EST: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG GCCTGATACATTGGATCCTGCACTTTTGCGTCCTGGTCGTCTGGACAGAAAEST: gi|37375424|gb|CF624148.1|CF624148
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
EST: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG GCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAAEST: gi|60355431|gb|DN222404.1|DN222404
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
EST: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG GCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAAEST: gi|67020716|gb|CO449465.1|CO449465
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
EST: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG GCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAAEST: gi|60399891|gb|DN232701.1|DN232701
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
EST: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG GCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAAEST: gi|211115113|gb|FL138970.1|FL138970
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
EST: GATGGGTTTNATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG GCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAAEST: gi|37373749|gb|CF623190.1|CF623190
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
EST: GGAACATCAAAGTTCTCATGGCCACTAATAG GCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAAEST: gi|40334078|gb|CK368148.1|CK368148
genomic: GGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
EST: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG GCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAAEST: gi|60350810|gb|DN217783.1|DN217783
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
EST: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG GCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAAEST: gi|60347007|gb|DN213980.1|DN213980
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
EST: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG GCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAAEST: gi|148928313|gb|EE284946.2|EE284946
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
EST: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTTTCATGGCCACTAATAG GCCTGATACATTGGATCCTGCACTTTTGCGTCCTGGTCGTCTGGACAGAAAEST: gi|149107886|gb|EE292246.2|EE292246
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
EST: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG GCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAAEST: gi|211115112|gb|FL138969.1|FL138969
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
EST: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG GCCTGATACATTGGATCCTGCACTTCTGCGTCCT-GTCGTCTGGACAGAAAEST: gi|31910877|gb|CD651643.1|CD651643
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
EST: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG GCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAAEST: gi|211114332|gb|FL138968.1|FL138968
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
EST: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG GCCTGATACATTGGATCCTGCACTTCTGCGTCCT-GTCGTCTGGACAGAAAEST: gi|37376686|gb|CF624896.1|CF624896
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
EST: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG GCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
tggccatatcccaggtcccagaagctgaccactttttgtttttttttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAAGGTAGAATTCGGGCTACCTGACCTGGAGGGCCGTACCCAAATCTTTAAG
agctgac putative branch site (score: 256)
ctgaccactttttgtt CT-rich tract
actttttgtttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttataggctccatgtcttgaactgatatggctttaaaatttattggccatatcccaggtcccagaagctgaccactttttgtttttttttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAAGGTAGAATTCGGGCTACCTGACCTGGAGGGCCGTACCCAAATCTTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - -ctccatg
- - - - - - - - - -tgaactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagctg