1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgaggtatcttatcaattttctcattaacgtgattcagatgcagtgagtgtttgacagagatccttttcgaacagCCACCAGTCGTCCTGAAGCCTTCAGAACACCAGTCTGAGCAGGAGGCACTTGAAATAGCAATTACAAAGTTGCTATTGAAGTCATATTACAATATTGTCA
species | Zea mays |
transcript | GRMZM2G180335_T03 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGCCTGCCCCTAATCTGGATCATTCATTCTCCACTATACAGTTAAGAGAG CCACCAGTCGTCCTGAAGCCTTCAGAACACEST: gi|211302452|gb|FL244058.1|FL244058
genomic: TGCCTGCCCCTAATCTGGATCATTCATTCTCCACTATACAGTTAAGAGAGgtgaggtatc ... tttcgaacagCCACCAGTCGTCCTGAAGCCTTCAGAACAC
EST: TGCCTGCCCCTAATCTGGATCATTCATTCTCCACTATACAGTTAAGAGAG CCACCAGTCGTCCTGAAGCCTTCAGAEST: gi|78087100|gb|DV515493.1|DV515493
genomic: TGCCTGCCCCTAATCTGGATCATTCATTCTCCACTATACAGTTAAGAGAGgtgaggtatc ... tttcgaacagCCACCAGTCGTCCTGAAGCCTTCAGA
EST: TGCCTGCCCCTAATCTGGATCATTCATTCTCCACTATACAGTTAAGAGAG CCACCAGTCGTCCTGAAGCCTTCAGAACACCAGTCTGAGCAGGAGGCACTT
genomic: TGCCTGCCCCTAATCTGGATCATTCATTCTCCACTATACAGTTAAGAGAGgtgaggtatc ... tttcgaacagCCACCAGTCGTCCTGAAGCCTTCAGAACACCAGTCTGAGCAGGAGGCACTT
ctcattaacgtgattcagatgcagtgagtgtttgacagagatccttttcgaacagCCACCAGTCGTCCTGAAGCCTTCAGAACACCAGTCTGAGCAGGAGGCACTTGAAATAGCAATTACAAAGTTGCTATTGAAGTCATATTACAATATTGTCA
tccttttc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaggtatcttatcaattttctcattaacgtgattcagatgcagtgagtgtttgacagagatccttttcgaacagCCACCAGTCGTCCTGAAGCCTTCAGAACACCAGTCTGAGCAGGAGGCACTTGAAATAGCAATTACAAAGTTGCTATTGAAGTCATATTACAATATTGTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG