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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaagctgagtaactggcagtaaaacgaaacaagtatatggcatgtttctatttatatgtacagtactaatgttttttgtgctgcagGTAATGCATAATTTCAATGGAACCACGGAGAAGGAACTGAGCTTAATTGTTGGCGATTATGTTGTTGTTCGTCAGGTCAGTGTGCTCTTAACACTATCAG

Basic information

species Zea mays
transcript GRMZM2G179459_T02
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G179459_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os07g32460.1 (Oryza sativa), 3'ss of exon 8
gtgaagctgagtaactggcagtaaaacgaaacaagtatatggcatgtttctatttatatgtacagtactaatgttttttgtgctgcagGTAATGCATAATTTCAATGGAACCACGGAGAAGGAACTGAGCTTAATTGTTGGCGATTATGTTGTTGTTCGTCAGGTCAGTGTGCTCTTAACACTATCAG
|| ||  |||||||||| || ||   | || ||| ||||    || || |   | || || |  | ||     || ||  |||||||||   ||||||| |||||||| ||||| || |||||  |||| ||||||||||| |||||||| ||||||||||||                         
gttaacatgagtaactgacatta---ccaagcaattataccatattttacatgtcatgtgcattgaacc----ttcttgttgctgcagGCGGTGCATAACTTCAATGGTACCACAGAAAAGGAGTTGAGTTTAATTGTTGGTGATTATGTCGTTGTTCGTCAG-------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtatatggcatgtttctatttatatgtacagtactaatgttttttgtgctgcagGTAATGCATAATTTCAATGGAACCACGGAGAAGGAACTGAGCTTAATTGTTGGCGATTATGTTGTTGTTCGTCAGGTCAGTGTGCTCTTAACACTATCAG
                                tactaat  putative branch site (score: 1)
                                      tgtttttt  CT-rich tract
          atgtttctatttatat  TA-rich tract