1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagctcgacgaaagtttagcccatgcatcccataatcccacctgcaccatctggcttctcatgctgtgaacatggagcgctagattaatctgtttctgcggcgtactgaaagacttgttttcgatagGAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCGAGGTATCCGGCGAGAAGTTCTGGAGACTCCCGCTGGAAGAGAGCTACTG
species | Zea mays |
transcript | GRMZM2G178958_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCG GAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCGEST: gi|26557845|gb|CA830080.1|CA830080
genomic: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCGgtaagctcga ... ttttcgatagGAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCG
EST: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCG GGATTTTCACGCCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCEST: gi|22714950|gb|BU197547.1|BU197547
genomic: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCGgtaagctcga ... ttttcgatagGAATTTTCACGCC-GAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCC
EST: GCAACGCTGACCGGCGCTTTGCGTTGTCGCACTCGGGCCTAGCATTGCCG GGATTTTCACGCCGAGCGAEST: gi|67022782|gb|CO451531.1|CO451531
genomic: GCAACGCTGACCGGCGCTT-GCGTTGTCGCACTCGGGCCTAGCATTGCCGgtaagctcga ... ttttcgatagGAATTTTCACGCCGAGCGA
EST: GGCGACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCG GGATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCGEST: gi|71596246|gb|DR906997.1|DR906997
genomic: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCGgtaagctcga ... ttttcgatagGAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCG
EST: GGCGACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCG GGATTTTCACGCCGAGCGACGAGCTTGCCAAGGAAGGTTGCCGCTGCTTCCEST: gi|149026811|gb|EE046171.2|EE046171
genomic: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCGgtaagctcga ... ttttcgatagGAATTTTCACGCCGAGCGACGAGCTTGCCAAGGA-GGTTGCCGCTGCTTCC
EST: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCG GAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCGEST: gi|116828289|gb|EC856475.1|EC856475
genomic: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCGgtaagctcga ... ttttcgatagGAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCG
EST: GGCGACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCG GGATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCGEST: gi|211121580|gb|FL034199.1|FL034199
genomic: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCGgtaagctcga ... ttttcgatagGAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCG
EST: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCG GGATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCGEST: gi|211121581|gb|FL034200.1|FL034200
genomic: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCGgtaagctcga ... ttttcgatagGAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCG
EST: GGCAACGCTGACCGGCGCTTGCKTTGTCGCACTCGGGCCTAGCATTGCCG GGATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCGEST: gi|148948295|gb|EC893812.2|EC893812
genomic: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCGgtaagctcga ... ttttcgatagGAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCG
EST: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCG GAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCGEST: gi|76291680|gb|DV031248.1|DV031248
genomic: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCGgtaagctcga ... ttttcgatagGAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCG
EST: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGGCTAGCATTGCCG GAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTEST: gi|71431472|gb|DR812522.1|DR812522
genomic: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCGgtaagctcga ... ttttcgatagGAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCT
EST: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCG GAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCGEST: gi|71431471|gb|DR812521.1|DR812521
genomic: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCGgtaagctcga ... ttttcgatagGAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCG
EST: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCG GAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCGEST: gi|5343060|gb|AI795470.1|AI795470
genomic: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCGgtaagctcga ... ttttcgatagGAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCG
EST: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCG GGATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCGEST: gi|78121907|gb|DV540291.1|DV540291
genomic: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCGgtaagctcga ... ttttcgatagGAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCG
EST: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCG GAATTTTCACGCCGAGCGACGAGCTTGCCCAGGAGGTTGCCGCTGCEST: gi|71435919|gb|DR816969.1|DR816969
genomic: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCGgtaagctcga ... ttttcgatagGAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGC
EST: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCG GAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCGEST: gi|110970954|gb|EE190854.1|EE190854
genomic: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCGgtaagctcga ... ttttcgatagGAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCG
EST: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCG GAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCGEST: gi|21843359|gb|BQ703940.1|BQ703940
genomic: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCGgtaagctcga ... ttttcgatagGAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCG
EST: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCG GGATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCGEST: gi|5928970|gb|AW056262.1|AW056262
genomic: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCGgtaagctcga ... ttttcgatagGAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCG
EST: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCG GGATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCGEST: gi|32907149|gb|CF011962.1|CF011962
genomic: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCGgtaagctcga ... ttttcgatagGAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCG
EST: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCG GAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCGEST: gi|76016701|gb|DT943871.1|DT943871
genomic: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCGgtaagctcga ... ttttcgatagGAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCG
EST: TAGCATTGCCG GAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCG
genomic: TAGCATTGCCGgtaagctcga ... ttttcgatagGAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCG
tggagcgctagattaatctgtttctgcggcgtactgaaagacttgttttcgatagGAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCGAGGTATCCGGCGAGAAGTTCTGGAGACTCCCGCTGGAAGAGAGCTACTG
gattaat putative branch site (score: 3)
cttgttttc putative PPT
tagattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctcgacgaaagtttagcccatgcatcccataatcccacctgcaccatctggcttctcatgctgtgaacatggagcgctagattaatctgtttctgcggcgtactgaaagacttgttttcgatagGAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCGAGGTATCCGGCGAGAAGTTCTGGAGACTCCCGCTGGAAGAGAGCTACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT