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gtaaatatgttatgtatagcaaatattctactgcaccattattgtgttcttgaatctgaacccttgtttttatagGAGTGTAATCTCTATCAACTTATGAAAGAAAGGGTCAAGCCTTTCTCCGAGTCTGAAGTCCGCAACTGGTGTTTTCAGATATTTCAGGCTCTTGCATACA
species | Zea mays |
transcript | GRMZM2G178822_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AAGAGGTTATCAGGGAAAATGATATATTATACTTCATAATGGAATACATG GAGTGTAATCTCTATCAACTTATGAAEST: gi|211443465|gb|FL042463.1|FL042463
genomic: AAGAGGTTATCAGGGAAAATGATATATTATACTTCATAATGGAATACATGgtaaatatgt ... gtttttatagGAGTGTAATCTCTATCAACTTATGAA
EST: AAGAGGTTATCAGGGAAAATGATATATTATACTTCATAATGGAATACATG GAGTGTAATCTCTATCAACTTATGAAAGAAAGGGTCAEST: gi|60345317|gb|DN212290.1|DN212290
genomic: AAGAGGTTATCAGGGAAAATGATATATTATACTTCATAATGGAATACATGgtaaatatgt ... gtttttatagGAGTGTAATCTCTATCAACTTATGAAAGAAAGGGTCA
EST: AAGAGGTTATCAGGGAAAATGATATATTATACTTCATAATGGAATACATG GAGTGTAATCTCTATCAACTTATGAAAGAAAGGGTCAAGCCTTTCTCCGAGEST: gi|211443464|gb|FL042462.1|FL042462
genomic: AAGAGGTTATCAGGGAAAATGATATATTATACTTCATAATGGAATACATGgtaaatatgt ... gtttttatagGAGTGTAATCTCTATCAACTTATGAAAGAAAGGGTCAAGCCTTTCTCCGAG
EST: AGAGGTTATCAGGGAAAATGATATATTATACTTCATAATGGAATACCATG GAGTGTAATCTCTATCAACTTATGAAAGA
genomic: AGAGGTTATCAGGGAAAATGATATATTATACTTCATAATGGAATAC-ATGgtaaatatgt ... gtttttatagGAGTGTAATCTCTATCAACTTATGAAAGA
aaatattctactgcaccattattgtgttcttgaatctgaacccttgtttttatagGAGTGTAATCTCTATCAACTTATGAAAGAAAGGGTCAAGCCTTTCTCCGAGTCTGAAGTCCGCAACTGGTGTTTTCAGATATTTCAGGCTCTTGCATACA
cccttgttttt CT-rich tract
ttgtttttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatatgttatgtatagcaaatattctactgcaccattattgtgttcttgaatctgaacccttgtttttatagGAGTGTAATCTCTATCAACTTATGAAAGAAAGGGTCAAGCCTTTCTCCGAGTCTGAAGTCCGCAACTGGTGTTTTCAGATATTTCAGGCTCTTGCATACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG