1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gcaagcccgtagctcaaaacaaaccgactgctttctgcaatgttttctgatcccctctgtatcccgttccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCTGGTGGCGTCACAGTGAGCTACTTCGAGTGGGTACAA
species | Zea mays |
transcript | GRMZM2G178415_T05 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAG ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCTEST: gi|60344011|gb|DN210984.1|DN210984
genomic: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
EST: AGTACATCATCAAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAG ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCTEST: gi|71766898|gb|DR964835.1|DR964835
genomic: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
EST: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAG ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCTEST: gi|67040711|gb|CO466966.1|CO466966
genomic: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
EST: ACTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAG ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCTEST: gi|6012198|gb|AW061740.1|AW061740
genomic: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
EST: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAG ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCTEST: gi|148934217|gb|EC878238.2|EC878238
genomic: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
EST: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAG ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCTEST: gi|148981457|gb|EE027656.2|EE027656
genomic: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
EST: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAG ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCTEST: gi|101387651|gb|EB815840.1|EB815840
genomic: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
EST: ATCACCCCACAGATCCAGAGGCAGACGAG ATCCTGTCAAAGAAAGGGGTCCTCATCCTCCCCGACATACTGGCCAACTCTEST: gi|148974520|gb|EE025306.2|EE025306
genomic: ATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
EST: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAG ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCTEST: gi|6993922|gb|AW453136.1|AW453136
genomic: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
EST: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAG ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGEST: gi|91053893|gb|EB164311.1|EB164311
genomic: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGG
EST: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAG ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCTEST: gi|78092009|gb|DV520383.1|DV520383
genomic: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
EST: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAG ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCTEST: gi|60394477|gb|DN227347.1|DN227347
genomic: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
EST: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAG ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCTEST: gi|211079581|gb|FL056327.1|FL056327
genomic: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
EST: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAG ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCTEST: gi|60343914|gb|DN210887.1|DN210887
genomic: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
EST: CATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAG ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCTEST: gi|71426411|gb|DR807461.1|DR807461
genomic: CATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
EST: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAG ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCTEST: gi|211375022|gb|FL430803.1|FL430803
genomic: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
EST: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAG ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCTEST: gi|50330055|gb|CO525181.1|CO525181
genomic: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
EST: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAG ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCTEST: gi|86470639|gb|DY237009.1|DY237009
genomic: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
EST: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAG ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCTEST: gi|148940230|gb|EC884999.2|EC884999
genomic: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
EST: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAG ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCTEST: gi|14243831|gb|BG841522.2|BG841522
genomic: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
EST: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAG ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCTEST: gi|74245082|gb|DT652996.1|DT652996
genomic: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
EST: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAG ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCTEST: gi|148934216|gb|EC878237.2|EC878237
genomic: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
EST: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAG ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCTEST: gi|78077525|gb|DV505959.1|DV505959
genomic: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
EST: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGAGGAG ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCTEST: gi|60357158|gb|DN224131.1|DN224131
genomic: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
EST: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAG ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCTEST: gi|71328973|gb|DR801176.1|DR801176
genomic: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
EST: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAG ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCTEST: gi|211079579|gb|FL056325.1|FL056325
genomic: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
EST: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAG ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCTEST: gi|5847156|gb|AW000235.1|AW000235
genomic: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
EST: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAG ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCC
genomic: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCC
ccgactgctttctgcaatgttttctgatcccctctgtatcccgttccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCTGGTGGCGTCACAGTGAGCTACTTCGAGTGGGTACAA
ttctgat putative branch site (score: 3)
tcccgttccatcccc putative PPT
aatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagcccgtagctcaaaacaaaccgactgctttctgcaatgttttctgatcccctctgtatcccgttccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCTGGTGGCGTCACAGTGAGCTACTTCGAGTGGGTACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG