1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ggcgatgtcctttcttttttttttctctctttgtccgatagttgatcgagttaaacgacactcagattagtgaatttaatgtgttccttgaaatgtgtagGCCATCCGAGATTTGGAGAAGGCAAGAGAAATATTAACTGTGCTGCATGAGCAGTTAAATGTAACAAAAACAGTGCTTGAG
species | Zea mays |
transcript | GRMZM2G178294_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TACTCCCGTTTCTTATTTTTG GCCATCCGAGATTTGGAGAAGGCAAGAGAAATATTAACTGTGCTGCATGAGEST: gi|32933149|gb|CF037961.1|CF037961
genomic: TACTCCCGTTTCTTATTTTTGgtaatttttt ... aaatgtgtagGCCATCCGAGATTTGGAGAAGGCAAGAGAAATATTAACTGTGCTGCATGAG
EST: TACTCCCGTTTCTTATTTTTG GCCATCCGAGATTTGGAGAAGGCAAGAGAAATATTAACTGTGCTGCATGAGEST: gi|211472098|gb|FL427752.1|FL427752
genomic: TACTCCCGTTTCTTATTTTTGgtaatttttt ... aaatgtgtagGCCATCCGAGATTTGGAGAAGGCAAGAGAAATATTAACTGTGCTGCATGAG
EST: GCCAGCTCTTGCCGACGTTGCTTATTCAGTACTCCCGTTTCTTATTTTTG GCCATCCGAGAEST: gi|60399477|gb|DN232289.1|DN232289
genomic: GCCAGCTCTTGCCGACGTTGCTTATTCAGTACTCCCGTTTCTTATTTTTGgtaatttttt ... aaatgtgtagGCCATCCGAGA
EST: GCCAGCTCTTGCCGACGTTGCTTATTCAGTACTCCCGTTTCTTATTTTTG GCCATCCGAGATTTGGAGAAGGCAAGAGAAATATTAACTGTGCTGCATGAGEST: gi|211296491|gb|FL380959.1|FL380959
genomic: GCCAGCTCTTGCCGACGTTGCTTATTCAGTACTCCCGTTTCTTATTTTTGgtaatttttt ... aaatgtgtagGCCATCCGAGATTTGGAGAAGGCAAGAGAAATATTAACTGTGCTGCATGAG
EST: GCCAGCTCTTGCCGACGTTGCTTATTCAGTACTCCCGTTTCTTATTTTTG GCCATCCGAGATTTGGAGAAGGCAAGAGAAATATTAACTGTGCTGCATGAGEST: gi|32933726|gb|CF038538.1|CF038538
genomic: GCCAGCTCTTGCCGACGTTGCTTATTCAGTACTCCCGTTTCTTATTTTTGgtaatttttt ... aaatgtgtagGCCATCCGAGATTTGGAGAAGGCAAGAGAAATATTAACTGTGCTGCATGAG
EST: ACTCCCGTTTCTTATTTTTG GCCATCCGAGATTTGGAGAAGGCAAGAGAAATATTAACTGTGCTGCATGAGEST: gi|9731923|gb|BE510675.1|BE510675
genomic: ACTCCCGTTTCTTATTTTTGgtaatttttt ... aaatgtgtagGCCATCCGAGATTTGGAGAAGGCAAGAGAAATATTAACTGTGCTGCATGAG
EST: GCCATCTCTTGCCGACGTTGCTTATTCAGTACTCCCGTTTCTTATTTTTG GCCATCCGAGATTTGGAGAAGGCAAGAGAAATATTAACTGTGCTGCATGAG
genomic: GCCAGCTCTTGCCGACGTTGCTTATTCAGTACTCCCGTTTCTTATTTTTGgtaatttttt ... aaatgtgtagGCCATCCGAGATTTGGAGAAGGCAAGAGAAATATTAACTGTGCTGCATGAG
tcgagttaaacgacactcagattagtgaatttaatgtgttccttgaaatgtgtagGCCATCCGAGATTTGGAGAAGGCAAGAGAAATATTAACTGTGCTGCATGAGCAGTTAAATGTAACAAAAACAGTGCTTGAG
atttaat putative branch site (score: 133)
attagtgaatttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggcgatgtcctttcttttttttttctctctttgtccgatagttgatcgagttaaacgacactcagattagtgaatttaatgtgttccttgaaatgtgtagGCCATCCGAGATTTGGAGAAGGCAAGAGAAATATTAACTGTGCTGCATGAGCAGTTAAATGTAACAAAAACAGTGCTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - -aacgaca