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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagataaatttttgttccacgttttgcagctccagcagtagtctgtcttttactgacaattcatttatactttttgattggcagGAGAGGGGGTTTGCTATTTAAG

Basic information

species Zea mays
transcript GRMZM2G177970_T02
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32944158|gb|CF048977.1|CF048977
EST:     GAGCGTGTAAATAATCTTTATGGTGGAAGAAAGTGGAAGAAATTGGGAGG                         GAGAGGGGGTTTGCTATTTAAG
genomic: GAGCGTGTAAATAATCTTTATGGTGGAAGAAAGTGGAAGAAATTGGGAGGgtgagataaa ... tgattggcagGAGAGGGGGTTTGCTATTTAAG
EST: gi|71449704|gb|DR830754.1|DR830754
EST:     GAGCGTGTAAATAATCTTTATGGTGGAAGAAAGTGGAAGAAATTGGGAGG                         GAGAGGGGGTTTGCTATTTAAG
genomic: GAGCGTGTAAATAATCTTTATGGTGGAAGAAAGTGGAAGAAATTGGGAGGgtgagataaa ... tgattggcagGAGAGGGGGTTTGCTATTTAAG
EST: gi|50331394|gb|CO526520.1|CO526520
EST:     GAGCGTGTAAATAATCTTTATGGTGGAAGAAAGTGGAAGAAATTGGGAGG                         GAGAGGGGGTTTGCTATTTAAG
genomic: GAGCGTGTAAATAATCTTTATGGTGGAAGAAAGTGGAAGAAATTGGGAGGgtgagataaa ... tgattggcagGAGAGGGGGTTTGCTATTTAAG
EST: gi|71449703|gb|DR830753.1|DR830753
EST:     GAGCGTGTAAATAATCTTTATGGTGGAAGAAAGTGGAAGAAATTGGGAGG                         GAGAGGGGGTTTGCTATTTAAG
genomic: GAGCGTGTAAATAATCTTTATGGTGGAAGAAAGTGGAAGAAATTGGGAGGgtgagataaa ... tgattggcagGAGAGGGGGTTTGCTATTTAAG
EST: gi|32930432|gb|CF035244.1|CF035244
EST:     GAGCGTGTAAATAATCTTTATGGTGGAAGAAAGTGGAAGAAATTGGGAGG                         GAGAGGGGGTTTGCTATTTAAG
genomic: GAGCGTGTAAATAATCTTTATGGTGGAAGAAAGTGGAAGAAATTGGGAGGgtgagataaa ... tgattggcagGAGAGGGGGTTTGCTATTTAAG
EST: gi|76294199|gb|DV033767.1|DV033767
EST:     GAGCGTGTAAATAATCTTTATGGTGGAAGAAAGTGGAAGAAATTGGGAGG                         GAGAGGGGGTTTGCTATTTAAGGTTCCTGA
genomic: GAGCGTGTAAATAATCTTTATGGTGGAAGAAAGTGGAAGAAATTGGGAGGgtgagataaa ... tgattggcagGAGAGGGGGTTTGCTATTTAAGGTTCCTGA
EST: gi|32930572|gb|CF035384.1|CF035384
EST:     GAGCGTGTAAATAATCTTTATGGTGGAAGAAAGTGTAAGAAATTGGGAGG                         GAGAGGGGGTTTGCTATTTAAG
genomic: GAGCGTGTAAATAATCTTTATGGTGGAAGAAAGTGGAAGAAATTGGGAGGgtgagataaa ... tgattggcagGAGAGGGGGTTTGCTATTTAAG
EST: gi|78120428|gb|DV538812.1|DV538812
EST:     GAGCGTGTAAATAATCTTTATGGTGGAAGAAAGTGGAAGAAATTGGGAGG                         GAGAGGGGGTTTGCTATTTAAGGT
genomic: GAGCGTGTAAATAATCTTTATGGTGGAAGAAAGTGGAAGAAATTGGGAGGgtgagataaa ... tgattggcagGAGAGGGGGTTTGCTATTTAAGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctccagcagtagtctgtcttttactgacaattcatttatactttttgattggcagGAGAGGGGGTTTGCTATTTAAG
                                      tacttttt  CT-rich tract
                            aattcatttatacttt  TA-rich tract