1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aaaagaaattcattcaaacttcttgaaatacttgtcactttttcctaaaatgacaagtaagcacactgaatgcaacttgaagtttacattatttttccagAAAATTTCATGACTGGTCTTCGTGTTGTGTTCGATCGGGAAAGGAAAATTCTTGGATGGAAGAAATTTAATT
species | Zea mays |
transcript | GRMZM2G177575_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGTTTATTGCCTGGCAATCGTCAAGAGCATGAAGCTCAACATTATTGGAC AAAATTTCATGACTGGTCTTCGTGTTGTGTTCGATCGGGAAAGGAAAATTCEST: gi|149106837|gb|EE188735.2|EE188735
genomic: TGTTTATTGCCTGGCAATCGTCAAGAGCATGAAGCTCAACATTATTGGACgtaagtttgt ... atttttccagAAAATTTCATGACTGGTCTTCGTGTTGTGTTCGATCGGGAAAGGAAAATTC
EST: TGTTTATTGCCTGGCAATCGTCAAGAGCATGAAGCTCAACATTATTGGAC AAAATTTCATGACTGGTCTTCGTGTTGTGTTCGATCGGGAAAGGAAAATTCEST: gi|86469449|gb|DY235819.1|DY235819
genomic: TGTTTATTGCCTGGCAATCGTCAAGAGCATGAAGCTCAACATTATTGGACgtaagtttgt ... atttttccagAAAATTTCATGACTGGTCTTCGTGTTGTGTTCGATCGGGAAAGGAAAATTC
EST: TGTTTATTGCCTGGCAATCGTCAAGAGCATGAAGCTCAACATTATTGGAC AAAATTTCATGACTGGTCTTCGTGTTGTGTTCGATCGGGAAAGGAAAATTCEST: gi|78110126|gb|DV528541.1|DV528541
genomic: TGTTTATTGCCTGGCAATCGTCAAGAGCATGAAGCTCAACATTATTGGACgtaagtttgt ... atttttccagAAAATTTCATGACTGGTCTTCGTGTTGTGTTCGATCGGGAAAGGAAAATTC
EST: TGTTTATTGCCTGGCAATCGTCAAGAGCATGAAGCTCAACATTATTGGAC AAAATTTCATGACTGGTCTTCGTGTTGTGTTCGATCGGGAAAG-AAAATTCEST: gi|78086094|gb|DV514487.1|DV514487
genomic: TGTTTATTGCCTGGCAATCGTCAAGAGCATGAAGCTCAACATTATTGGACgtaagtttgt ... atttttccagAAAATTTCATGACTGGTCTTCGTGTTGTGTTCGATCGGGAAAGGAAAATTC
EST: TGTTTATTGCCTGGCAATCGTCAAGAGCATGAAGCTCAACATTATTGGAC AAAATTTCATGACTGGTCTTCGTGTTGTGTTCGATCGGGAAAGGAAAATTCEST: gi|5650051|gb|AI920411.1|AI920411
genomic: TGTTTATTGCCTGGCAATCGTCAAGAGCATGAAGCTCAACATTATTGGACgtaagtttgt ... atttttccagAAAATTTCATGACTGGTCTTCGTGTTGTGTTCGATCGGGAAAGGAAAATTC
EST: TGTTTATTGCCTGGCAATCGTCAAGAGCATGAAGCTCACCATTATTGGAC AAAATTTCATGACTGGTCTTCGTGTTGTGTTCGATCGGGAAAGGAAAATTCEST: gi|76293066|gb|DV032634.1|DV032634
genomic: TGTTTATTGCCTGGCAATCGTCAAGAGCATGAAGCTCAACATTATTGGACgtaagtttgt ... atttttccagAAAATTTCATGACTGGTCTTCGTGTTGTGTTCGATCGGGAAAGGAAAATTC
EST: TGTTTATTGCCTGGCAATCGTCAAGAGCATGAAGCTCAACATTATTGGAC AAAATTTCATGACTGGTCTTCGTGTTGTGTTCGATCGGGAAAGGAAAATTCEST: gi|113701887|gb|EE679391.1|EE679391
genomic: TGTTTATTGCCTGGCAATCGTCAAGAGCATGAAGCTCAACATTATTGGACgtaagtttgt ... atttttccagAAAATTTCATGACTGGTCTTCGTGTTGTGTTCGATCGGGAAAGGAAAATTC
EST: TGTTTATTGCCTGGCAATCGTCAAGAGCATGAAGCTCAACATTATTGGAC AAAATTTCATGACTGGTCTTCGTGTTGTGTTCGATCGGGAAAGGAAAATTCEST: gi|213178693|gb|FM194771.1|FM194771
genomic: TGTTTATTGCCTGGCAATCGTCAAGAGCATGAAGCTCAACATTATTGGACgtaagtttgt ... atttttccagAAAATTTCATGACTGGTCTTCGTGTTGTGTTCGATCGGGAAAGGAAAATTC
EST: TGTTTATTGCCTGGCAATCGTCAAGAGCATGAAGCTCAACATTATTGGAC AAAATTTCATGACTGGTCTTCGTGTTGTGTTCGATCGGGAAAGGAAAATTCEST: gi|211383908|gb|FL466788.1|FL466788
genomic: TGTTTATTGCCTGGCAATCGTCAAGAGCATGAAGCTCAACATTATTGGACgtaagtttgt ... atttttccagAAAATTTCATGACTGGTCTTCGTGTTGTGTTCGATCGGGAAAGGAAAATTC
EST: TGTTTATTGCCTGGCAATCGTCAAGAGCATGAAGCTCAACATTATTGGAC AAAATTTCATGACTGGTCTTCGTGTTGTGTTCGATCGGGAAAGGAAAATTC
genomic: TGTTTATTGCCTGGCAATCGTCAAGAGCATGAAGCTCAACATTATTGGACgtaagtttgt ... atttttccagAAAATTTCATGACTGGTCTTCGTGTTGTGTTCGATCGGGAAAGGAAAATTC
taaaatgacaagtaagcacactgaatgcaacttgaagtttacattatttttccagAAAATTTCATGACTGGTCTTCGTGTTGTGTTCGATCGGGAAAGGAAAATTCTTGGATGGAAGAAATTTAATT
tcctaaa putative branch site (score: 2)
ttatttttcc putative PPT
aagtttacattatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaagaaattcattcaaacttcttgaaatacttgtcactttttcctaaaatgacaagtaagcacactgaatgcaacttgaagtttacattatttttccagAAAATTTCATGACTGGTCTTCGTGTTGTGTTCGATCGGGAAAGGAAAATTCTTGGATGGAAGAAATTTAATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA