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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttattcttttttctcatctcgaatagtaatttacttgtgtacacagaatttgttttgctgcactaaatgatttggcctctccctatatagtccttatagcatgtcatgacttgcgagcaatgcacatgtttttctctctttcaagGATGGCTATGTACCATATCACTCAGCAAGAATGGAGCTCTGCCCAGCTGCATCATCGGACACCTCAAAAAAGGGTCAAGTCTTCACAGAAATGCTCAACA

Basic information

species Zea mays
transcript GRMZM2G176042_T01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G176042_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os12g06800.1 (Oryza sativa), 3'ss of exon 13
gttattcttttttctcatctcgaatag---taatttacttgtgtacacagaatttgttttgctgcactaaatgatttggcctctccctatatagtccttatagc-atgtcatgacttgcgagcaatgcacatgtttttctctctttcaagGATGGCTATGTACCATATCACTCAGCAAGAATGGAGCTCTGCCCAGCTGCATCATCGGACACCTCAAAAAAGGGTCAAGTCTTCACAGAAATGCTCAACA
||||| |  ||| | | |    || ||   |||||||| |||| |  |||| ||    | ||||| || |||  ||  || | ||     ||  || ||||  | |  |||||| ||        || | |  ||||  |  | | | ||||||| |||||||||||||| ||||||||||| ||||||||||| ||||||||||| || | |||||  ||||| |||||||| ||||||||||||||||
gttatcccctttccacgtgattaacagctttaatttacatgtgaat-cagagttg---tggctgctctgaatctttcagcatttcta---atgatctttatttcgaaatcatgagtt--------tgta-acattttcttgccataccagGATGGTTATGTACCATATCATTCAGCAAGAATCGAGCTCTGCCCGGCTGCATCATCAGATAACTCAAGGAAGGGCCAAGTCTTTACAGAAATGCTCAACA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32868550|gb|CF008232.1|CF008232
EST:     TGAAAACATTGGAGAACTTCAAAAATATCATATTGTTATCATCACCACAG                         GATGGCTATGTACCATATCACTCAGCGAGAATGGAGCTCTGCCCAGCTGCA
genomic: TGAAAACATTGGAGAACTTCAAAAATATCATATTGTTATCATCACCACAGgttattcttt ... ctctttcaagGATGGCTATGTACCATATCACTCAGCAAGAATGGAGCTCTGCCCAGCTGCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccttatagcatgtcatgacttgcgagcaatgcacatgtttttctctctttcaagGATGGCTATGTACCATATCACTCAGCAAGAATGGAGCTCTGCCCAGCTGCATCATCGGACACCTCAAAAAAGGGTCAAGTCTTCACAGAAATGCTCAACA
                                  catgtttttctctctt  CT-rich tract
                                   atgttttt  TA-rich tract