1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gttagtattttttttgtgtgccgtacatttatgttgtttattacttccattctaatttctgcttaatgcatgcatgcagTGAACTGCCAGAATTTCTTGGTGGCAAATGCAATTGTATTGAAGGTTGCCAAAGATCTGACAAAGGTCCTTGGAAGGATCCCAACATAATAAAG
species | Zea mays |
transcript | GRMZM2G174990_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTTCTTGGGAATAAGTATCAACATAAGTTGCTCGAAATAATTGACGAGTG TGAACTGCCAGAATTTCTTGGTGGCAAATGCAATTGTATTGAAGGTTGCCAEST: gi|31353713|gb|CD438070.1|CD438070
genomic: GTTCTTGGGAATAAGTATCAACATAAGTTGCTCGAAATAATTGACGAGTGgttagtattt ... atgcatgcagTGAACTGCCAGAATTTCTTGGTGGCAAATGCAATTGTATTGAAGGTTGCCA
EST: GTTCTTGGGAATAAGTATCAACATAAGTTGCTCGAAATAATTGACGAGTG TGAACTGCCAGAATTTCTTGGTGGCAAATGCAATTGTATTGAAGGTTGCCAEST: gi|18660585|gb|BM500941.1|BM500941
genomic: GTTCTTGGGAATAAGTATCAACATAAGTTGCTCGAAATAATTGACGAGTGgttagtattt ... atgcatgcagTGAACTGCCAGAATTTCTTGGTGGCAAATGCAATTGTATTGAAGGTTGCCA
EST: GTTGCTGGAAATAATTGACGAGTG TGAACTGCCAGAATTTCTTGGTGGCAAATGCAATTGTATTGAAGGTTGCCAEST: gi|211480218|gb|FK977823.1|FK977823
genomic: GTTGCTCGAAATAATTGACGAGTGgttagtattt ... atgcatgcagTGAACTGCCAGAATTTCTTGGTGGCAAATGCAATTGTATTGAAGGTTGCCA
EST: GTTCTTGGGAATAAGTATCAACATAAGTTGCTCGAAATAATTGACGAGTG TGAACTGCCAGAATTTCTTGGTGGCAAATGCAATTGTATTGAAGGTTGCCAEST: gi|211485991|gb|FK977851.1|FK977851
genomic: GTTCTTGGGAATAAGTATCAACATAAGTTGCTCGAAATAATTGACGAGTGgttagtattt ... atgcatgcagTGAACTGCCAGAATTTCTTGGTGGCAAATGCAATTGTATTGAAGGTTGCCA
EST: GTTCTTGGGAATAAGTATCAACATAAGTTGCTCGAAATAATTGACGAGTG TGAACTGCCAGAATTTCTTGGTGGCAAATGCAATTGTATTGAAGGTTGCCA
genomic: GTTCTTGGGAATAAGTATCAACATAAGTTGCTCGAAATAATTGACGAGTGgttagtattt ... atgcatgcagTGAACTGCCAGAATTTCTTGGTGGCAAATGCAATTGTATTGAAGGTTGCCA
acatttatgttgtttattacttccattctaatttctgcttaatgcatgcatgcagTGAACTGCCAGAATTTCTTGGTGGCAAATGCAATTGTATTGAAGGTTGCCAAAGATCTGACAAAGGTCCTTGGAAGGATCCCAACATAATAAAG
tatgttgtttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtattttttttgtgtgccgtacatttatgttgtttattacttccattctaatttctgcttaatgcatgcatgcagTGAACTGCCAGAATTTCTTGGTGGCAAATGCAATTGTATTGAAGGTTGCCAAAGATCTGACAAAGGTCCTTGGAAGGATCCCAACATAATAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG