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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtttcactgccccgaattatgtgtgatcgtattatggtgtctagtactctgtaccttgatgtcgctgacttgaccttgcccccccaccgcctctgtgcagAAGATGCTGCGTCTAGATCCCAGCAAGAGGATCACCGCCCGCGCCGCCCTCGAGCACGACTACTTCAGGGACCTCGAGCACGCCTAGCAGGATATGGATG

Basic information

species Zea mays
transcript GRMZM2G174596_T02
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G174596_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os02g03060.1 (Oryza sativa), 3'ss of exon 6
gtttcactgccccgaat-tatgtgtgatcgtatt---atggtgtctagtactctgtaccttgatgtcgctgacttgaccttgcc--ccccca---ccgcctctgtgcagAAGATGCTGCGTCTAGATCCCAGCAAGAGGATCACCGCCCGCGCCGCCCTCGAGCACGACTACTTCAGGGACCTCGAGCACGCCTAGCAGGATATGGATG---
       |   || ||| |||  ||||   ||||    |||  ||   || | |||   ||||| | ||   | |  ||||||   |  | |     |||||  ||||||| ||||| ||| ||||||| ||||| || ||||  ||||| || |||||||||||||| ||||||| |||||| ||    ||   | ||  ||||  |    
------atattccaaatctatcagtgacattattttcttggcatcctttaat-tgtcagttgatat-gcatccatagccttgctgactgctatgtttgcctc-atgcagAAAATGCTCCGTTTAGATCCAAGCAAAAGAATCAATGCCCGTGCTGCCCTCGAGCACGAGTACTTCAAGGACCTGGAAGTGGC---GTAGATTATGCCTCATC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4730272|gb|AI649438.1|AI649438
EST:     TTGCAACGGTGGTCCCGACACTCGAACCGTCGGGAATCGATCTCCTATCT                         AAGATGCTGCGTCTAGATCCCAGCAAGAGGATCACCGCCCGCGCCGCCCTC
genomic: TTGCAACGGTGGTCCCGACACTCGAACCGTCGGGAATCGATCTCCTATCTgtaagtccga ... ctctgtgcagAAGATGCTGCGTCTAGATCCCAGCAAGAGGATCACCGCCCGCGCCGCCCTC
EST: gi|50329879|gb|CO525005.1|CO525005
EST:     TTGCAACGGTGGTCCCGACACTCGAACCGTCGGGAATCGATCTCCTATTT                         AAGATGCTGCGTCTAGATCCCAGCAAGAGGATCACCGCCCGCGCCGCCCTC
genomic: TTGCAACGGTGGTCCCGACACTCGAACCGTCGGGAATCGATCTCCTATCTgtaagtccga ... ctctgtgcagAAGATGCTGCGTCTAGATCCCAGCAAGAGGATCACCGCCCGCGCCGCCCTC
EST: gi|50324561|gb|CO519687.1|CO519687
EST:     TTGCAACGGTGGTCCCGACACTCGAACCGTCGGGAATCGATCTCCTATCT                         AAGATGCTGCGTCTAGATCCCAGCAAGAGGATCACCGCCCGCGCCGCCCTC
genomic: TTGCAACGGTGGTCCCGACACTCGAACCGTCGGGAATCGATCTCCTATCTgtaagtccga ... ctctgtgcagAAGATGCTGCGTCTAGATCCCAGCAAGAGGATCACCGCCCGCGCCGCCCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actctgtaccttgatgtcgctgacttgaccttgcccccccaccgcctctgtgcagAAGATGCTGCGTCTAGATCCCAGCAAGAGGATCACCGCCCGCGCCGCCCTCGAGCACGACTACTTCAGGGACCTCGAGCACGCCTAGCAGGATATGGATG
                            ccttgcccccccaccg  CT-rich tract