Sequence
atgc intronic sequence ATGC exonic sequencegtattatgtcctcaagtttaaaactattgccctgttatttctgaagctcatcgattttatgttttcatctggttagCGGTTTGGAAGTGGTTCAATACCAACACATCTTGTTGGGGCTGCTTTGCTTAGAGGAGAGTGGAAGGTTGCTGTAAACTTGATTCTTGATCCAAGGGAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G173137_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os05g43374.1 (Oryza sativa), 3'ss of exon 5
-------------------gtattatgtcctcaagtttaaaactattgccctgttatttctgaagctcatcgattttatgttttcatctggttagCGGTTTGGAAGTGGTTCAATACCAACACATCTTGTTGGGGCTGCTTTGCTTAGAGGAGAGTGGAAGGTTGCTGTAAACTTGATTCTTGATCCAAGGGAAG
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gtatgaagccagaaccttttcgttatgcttcaaaacctaa--ctggtacgtgtttacttttgaagctcatcaagttcatcttttttgttggttagCGTTTTGGAAGTGGTTCAGTACCTACTCACCTTGTTGGAGCTGCTTTGCTTAGAGGAGAGTGGAGAAGTTCTGTAAATTTGATTCTTGATCCAAGGGAAG
upper sequence: GRMZM2G173137_T01 (Zea mays), 3'ss of exon 8
lower sequence: AT3G04820.1 (Arabidopsis thaliana), 3'ss of exon 9
-----------------------------------------------------------------------------------gtattatgtcctcaagtttaaaactattgccctgttatttctgaagctcatcgattttatgttttcatctggt--tagCGGTTTGGAAGTGGTTCAATACCAACACATCTTGTTGGGGCTGCTTTGCTTAGAGGAGAGTGGAAGGTTGCTGTAAACTTGATTCTTGATCCAAGGGAAG
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gtactattctcttgtcgagttgtaatgatatatatgttattttctctttttagtttttagtagctaattcaacttacacttttgcattgtggtatcgagt--agtacttgaatattatcaaatagaaatattttcttatgaattttgtaattgtgtgacagCGTTTTGGAAGTGGTTCAGTACCAACCCACCATGTAGGAGCTGCACTATTGAAAGGAGAGTGGAAAGATGCTGTAGACATGATTCTTGATCCAAGAGAAA
upper sequence: GRMZM2G173137_T01 (Zea mays), 3'ss of exon 8
lower sequence: Vv14s0030g01850.t01 (Vitis vinifera), 3'ss of exon 4
--------------------gtattatgtcctcaagtttaaaactattgccctgttatttctga--agctcatcgattttatgttttcatctggtt--agCGGTTTGGAAGTGGTTCAATACCAACACATCTTGTTGGGGCTGCTTTGCTTAGAGGAGAGTGGAAGGTTGCTGTAAACTTGATTCTTGATCCAAGGGAAG
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gctttcttctgttacaccccatcccaccaaaaaaaaaaaaaaaggaaagcttcaaagtttatgattaccaaatttaactcattggaacaaattgctgcagCGTTTTGGAAGTGGTTCTGTGCCAACTCACCTTATTGGAGCTGCATTACTCAGAGGAGAGTGGGAAACTGCTGTGAGCTTGATTCTGGATCCAAGAGAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211231092|gb|FL345106.1|FL345106EST: CAGTAGATGGCCTAGGAAAGAATGGATTTATCAACTACTATGGTTTGCAG CGGTTTGGAAGTGGTTCAATACCAACACATCTTGTTGGGTCTGCTTTGCTT
genomic: CAGTAGATGGCCTAGGAAAGAATGGATTTATCAACTACTATGGTTTGCAGgtattatgtc ... atctggttagCGGTTTGGAAGTGGTTCAATACCAACACATCTTGTTGGGGCTGCTTTGCTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aactattgccctgttatttctgaagctcatcgattttatgttttcatctggttagCGGTTTGGAAGTGGTTCAATACCAACACATCTTGTTGGGGCTGCTTTGCTTAGAGGAGAGTGGAAGGTTGCTGTAAACTTGATTCTTGATCCAAGGGAAG
ttttcatct CT-rich tract
attttatgttttcat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtattatgtcctcaagtttaaaactattgccctgttatttctgaagctcatcgattttatgttttcatctggttagCGGTTTGGAAGTGGTTCAATACCAACACATCTTGTTGGGGCTGCTTTGCTTAGAGGAGAGTGGAAGGTTGCTGTAAACTTGATTCTTGATCCAAGGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG