1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ctacaatacaggcctgtaaaaggcactgtcaattcttttggatttatgttgttgtataattattcattattctaaaatgattattttttcaatatttcagTGTGTCATCAAAGGGTGGGTGCAGTTACTTGTTTAGCATTGCTTCCCAGATTGATAGGGAAAGAGTTCGGACTGTAGGGGCTATTGAATACTTTATTGAT
species | Zea mays |
transcript | GRMZM2G172427_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GGTGAATTTGTGAAGGCTGACAA-GCTATGAAACA-GCAGAAAG TGTGTCATCAAAGGGTGGGTGCAGTTACTTGTTTAGCATTGCTTCCCAGATEST: gi|32832594|gb|CD972272.1|CD972272
genomic: GGTGAAGTTGTGAAGGCTGACAAGGCTATGAAAAATGCAGAAAGgtttggcatt ... aatatttcagTGTGTCATCAAAGGGTGGGTGCAGTTACTTGTTTAGCATTGCTTCCCAGAT
EST: TATATTGGTGAAGTTGTGAAGGCTGACAAGGCTATGAAAAATGCAGAAAG TGTGTCATCAAAGGGTGGGTGCAGTTACTTGTTTAGCATTGCTTCCCAGATEST: gi|14701180|gb|BI233598.1|BI233598
genomic: TATATTGGTGAAGTTGTGAAGGCTGACAAGGCTATGAAAAATGCAGAAAGgtttggcatt ... aatatttcagTGTGTCATCAAAGGGTGGGTGCAGTTACTTGTTTAGCATTGCTTCCCAGAT
EST: AAAAATGCAG-AAG TGTGTCATCAAAGGGTGGGTGCAGTTACTTGTTTAGCATTGCTTCCCAGATEST: gi|69351242|gb|DR452068.1|DR452068
genomic: AAAAATGCAGAAAGgtttggcatt ... aatatttcagTGTGTCATCAAAGGGTGGGTGCAGTTACTTGTTTAGCATTGCTTCCCAGAT
EST: TATATTGGTGAAGTTGTGAAGGCTGACAAGGCTATGAAAAATGCAGAAAG TGTGTCATCAAAGGGTGGGTGCAGTTACTTGTTTAGCATTGCTTCCCAGAT
genomic: TATATTGGTGAAGTTGTGAAGGCTGACAAGGCTATGAAAAATGCAGAAAGgtttggcatt ... aatatttcagTGTGTCATCAAAGGGTGGGTGCAGTTACTTGTTTAGCATTGCTTCCCAGAT
atgttgttgtataattattcattattctaaaatgattattttttcaatatttcagTGTGTCATCAAAGGGTGGGTGCAGTTACTTGTTTAGCATTGCTTCCCAGATTGATAGGGAAAGAGTTCGGACTGTAGGGGCTATTGAATACTTTATTGAT
ttctaaa putative branch site (score: 73)
ttttttca putative PPT
tataattattcattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctacaatacaggcctgtaaaaggcactgtcaattcttttggatttatgttgttgtataattattcattattctaaaatgattattttttcaatatttcagTGTGTCATCAAAGGGTGGGTGCAGTTACTTGTTTAGCATTGCTTCCCAGATTGATAGGGAAAGAGTTCGGACTGTAGGGGCTATTGAATACTTTATTGAT
- acaataca
- - - - - -gcctgta
- - - - - - - - - - - gcactgt
- - - - - - - - - - - - - - - - - - - - - - - tgttgtt