1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gcaagtccttgtagttataatcgtgctttgatcctgatacagtaggttcagaagatacgttgtttcaggtttggtcatatttatccgattttgttgtatttatgtgttatataaaatatgcagCGAATAACAATCACTGAAATCCGGAATCATAGTTGGTTCCTGAAGAACCTTCCTGCTGATCTTATGGATGATGATAGCATGAGCAACCAATATGAGGAGC
species | Zea mays |
transcript | GRMZM2G171435_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CAGAGTGCAGGCATCTAATTTCGAGGATTTTTGTTGGTGATCCTGCTATG CGAATAACAATCACTGAAATCCGGAATCATAGTTGGTTCCTGAAGAACCTTEST: gi|32859143|gb|CD998824.1|CD998824
genomic: CAGAGTGCAGGCATCTAATTTCGAGGATTTTTGTTGGTGATCCTGCTATGgcaagtcctt ... aaatatgcagCGAATAACAATCACTGAAATCCGGAATCATAGTTGGTTCCTGAAGAACCTT
EST: CAGAGTGCAGGCATCTAATTTCGAGGATTTTTGTTGGTGATCCTGCTATG CGAATAACAATCACTGAAATCCGGAATCATAGTTGGTTCCTGAAGAACCTTEST: gi|78021238|gb|DV489625.1|DV489625
genomic: CAGAGTGCAGGCATCTAATTTCGAGGATTTTTGTTGGTGATCCTGCTATGgcaagtcctt ... aaatatgcagCGAATAACAATCACTGAAATCCGGAATCATAGTTGGTTCCTGAAGAACCTT
EST: CAGAGTGCAGGCATCTAATTTCGAGGATTTTTGTTGGTGATCCTGCTATG CGAATAACAATCACTGAAATCCGGAATCATAGTTGGTTCCTGAAGAACCTTEST: gi|6022633|gb|AW067445.1|AW067445
genomic: CAGAGTGCAGGCATCTAATTTCGAGGATTTTTGTTGGTGATCCTGCTATGgcaagtcctt ... aaatatgcagCGAATAACAATCACTGAAATCCGGAATCATAGTTGGTTCCTGAAGAACCTT
EST: CAGAGTGCAGGCATCTAATTTCGAGGATTTTTGNTGGNGATCCTGCTATG CGAATAACAATCACTGAAATCCGGAATCATAGTTGGTTCCTGAAGAACCTTEST: gi|32932704|gb|CF037516.1|CF037516
genomic: CAGAGTGCAGGCATCTAATTTCGAGGATTTTTGTTGGTGATCCTGCTATGgcaagtcctt ... aaatatgcagCGAATAACAATCACTGAAATCCGGAATCATAGTTGGTTCCTGAAGAACCTT
EST: CAGAGTGCAGGCATCTAATTTCGAGGATTTTTGTTGGTGATCCTGCTATG CGAATAACAATCACTGAAATCCGGAATCATAGTTGGTTCCTGAAGAACCTTEST: gi|88749704|gb|DY533845.1|DY533845
genomic: CAGAGTGCAGGCATCTAATTTCGAGGATTTTTGTTGGTGATCCTGCTATGgcaagtcctt ... aaatatgcagCGAATAACAATCACTGAAATCCGGAATCATAGTTGGTTCCTGAAGAACCTT
EST: CAGAGTGCAGGCATCTAATTTCGAGGATTTTTGTTGGTGATCCTGCTATG CGAATAACAATCACTGAAATCCGGAATCATAGTTGGTTCCTGAAGAACCTTEST: gi|9028616|gb|BE238656.1|BE238656
genomic: CAGAGTGCAGGCATCTAATTTCGAGGATTTTTGTTGGTGATCCTGCTATGgcaagtcctt ... aaatatgcagCGAATAACAATCACTGAAATCCGGAATCATAGTTGGTTCCTGAAGAACCTT
EST: CAGAGTGCAGGCATCTAATTTCGAGGATTTTTGTTGGTGATCCTGCTATG CGAATAACAATCACTGAAATCCGGAATCATAGTTGGTTCCTGAAGAACCTT
genomic: CAGAGTGCAGGCATCTAATTTCGAGGATTTTTGTTGGTGATCCTGCTATGgcaagtcctt ... aaatatgcagCGAATAACAATCACTGAAATCCGGAATCATAGTTGGTTCCTGAAGAACCTT
gtttggtcatatttatccgattttgttgtatttatgtgttatataaaatatgcagCGAATAACAATCACTGAAATCCGGAATCATAGTTGGTTCCTGAAGAACCTTCCTGCTGATCTTATGGATGATGATAGCATGAGCAACCAATATGAGGAGC
attttgttgtatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagtccttgtagttataatcgtgctttgatcctgatacagtaggttcagaagatacgttgtttcaggtttggtcatatttatccgattttgttgtatttatgtgttatataaaatatgcagCGAATAACAATCACTGAAATCCGGAATCATAGTTGGTTCCTGAAGAACCTTCCTGCTGATCTTATGGATGATGATAGCATGAGCAACCAATATGAGGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG