1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aagcatgtcaagaaatttgacgtggtaacattttcaaccagatgtcgaaaaaagttcaagtgtttttatgccaagaattaatttttttccatcctcgcagGATTTTATGGAAGTGACCACTGCCCTGTTTCGCTTGAGCTTTCCGAAGCTGTAGCAGAAGAAGCACCAGGACAGCCCAAGCCATCCATCTAAATATACCA
species | Zea mays |
transcript | GRMZM2G170291_T04 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CAGAATAGTTTCATGTGAAATGCATGGCCGTGGCATTGAATTGGATG GATTTTATGGAAGTGACCACTGCCCTAGTTTCGCTTGAGCTTTCCGAAGC
genomic: CAGAATAGTTTCATGTGAAATGCATGGCCGTGGCATTGAATTGGATGgtatgaagtt ... atcctcgcagGATTTTATGGAAGTGACCACTGCCCT-GTTTCGCTTGAGCTTTCCGAAGC
cgaaaaaagttcaagtgtttttatgccaagaattaatttttttccatcctcgcagGATTTTATGGAAGTGACCACTGCCCTGTTTCGCTTGAGCTTTCCGAAGCTGTAGCAGAAGAAGCACCAGGACAGCCCAAGCCATCCATCTAAATATACCA
aattaat putative branch site (score: 23)
tttttttccatcctcg CT-rich tract
aagaattaattttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagcatgtcaagaaatttgacgtggtaacattttcaaccagatgtcgaaaaaagttcaagtgtttttatgccaagaattaatttttttccatcctcgcagGATTTTATGGAAGTGACCACTGCCCTGTTTCGCTTGAGCTTTCCGAAGCTGTAGCAGAAGAAGCACCAGGACAGCCCAAGCCATCCATCTAAATATACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
aagcatg
- - - - caagaaa
- - - - - - - - - - - - - - - - -tcaacca
- - - - - - - - - - - - - - - - - - - - - - - gaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgcca