1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaagattatcatcacttcatatattagaaaaaatatatttcactccctgctaatgatctttaccccttccagCTCCATATCTTATTCTGTGTCTGGTCAGCTGTGGCTCCTCCATTTCCATTCAAAGGAAAATCCTTGGC
species | Zea mays |
transcript | GRMZM2G169773_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GACTGAAAGTGCTTTGAAGTTTGGGTGGTTTTTTCTTGTTTTACCTT CTCCATATCTTATTEST: gi|71449251|gb|DR830301.1|DR830301
genomic: GACTGAAAGTGCTTTGAAGTTTGGGTGGTTTTT-CTTGTTTTACCTTgtaagattat ... ccccttccagCTCCATATCTTATT
EST: GACTGACAGTGCTTTGAAGTTTGGGTGGTTTTTCTTGTTTTACCTT CTCCATATCTTATTCTGTGTCTGGTCAGCTGTGGCTCCTCCATTTCCATTCEST: gi|78077114|gb|DV505548.1|DV505548
genomic: GACTGAAAGTGCTTTGAAGTTTGGGTGGTTTTTCTTGTTTTACCTTgtaagattat ... ccccttccagCTCCATATCTTATTCTGTGTCTGGTCAGCTGTGGCTCCTCCATTTCCATTC
EST: GACTGAAAGTGCTTTGAAGTTTGGGTGGTTTTTCTTGTTTTACCTT CTCCATATCTTATTCTGTGTCTGGTCAGCTGTGGCTCCTCCATTTCCATTCEST: gi|78115059|gb|DV533447.1|DV533447
genomic: GACTGAAAGTGCTTTGAAGTTTGGGTGGTTTTTCTTGTTTTACCTTgtaagattat ... ccccttccagCTCCATATCTTATTCTGTGTCTGGTCAGCTGTGGCTCCTCCATTTCCATTC
EST: GACTGAAAGTGCTTTGAAGTTTGGGTGGTTTTTCTTGTTTTACCTT CTCCATATCTTATTCTGTGTCTGGTCAGCTGTGGCTCCTCCATTTC-ATTT
genomic: GACTGAAAGTGCTTTGAAGTTTGGGTGGTTTTTCTTGTTTTACCTTgtaagattat ... ccccttccagCTCCATATCTTATTCTGTGTCTGGTCAGCTGTGGCTCCTCCATTTCCATT-
catatattagaaaaaatatatttcactccctgctaatgatctttaccccttccagCTCCATATCTTATTCTGTGTCTGGTCAGCTGTGGCTCCTCCATTTCCATTCAAAGGAAAATCCTTGGC
tgctaat putative branch site (score: 2)
tctttaccccttcc putative PPT
attagaaaaaatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagattatcatcacttcatatattagaaaaaatatatttcactccctgctaatgatctttaccccttccagCTCCATATCTTATTCTGTGTCTGGTCAGCTGTGGCTCCTCCATTTCCATTCAAAGGAAAATCCTTGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA