1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagccatgagacacagatacctgtaaactgacaccaggctcaactgcgactcggtattcctttctcttcgtactgatatgactcctccgttgtgtctgttgtagGTTCTCGTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATCGCTGGGCTTTTCGGCAAAGATATCTCGCATGCTGGTGCTACCTAGAGAC
species | Zea mays |
transcript | GRMZM2G169516_T03 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGTTCACTCCTGGTGATATTTCGTTCGTTCAAAACGCTGGAGTCAAAGCG GTTCTCGTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATCEST: gi|211073093|gb|FL464915.1|FL464915
genomic: TGTTCACTCCTGATGATATCTCGTTCGTTCAAAACGCTGGGGTCAAAGCGgtaagccatg ... tctgttgtagGTTCTCGTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATC
EST: TGTTCACTCCTGATGATATCTCGTTCGTTCAAAACGCTGGGGTCAAAGCG GTTCTCGTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATCEST: gi|84969902|gb|DV170843.2|DV170843
genomic: TGTTCACTCCTGATGATATCTCGTTCGTTCAAAACGCTGGGGTCAAAGCGgtaagccatg ... tctgttgtagGTTCTCGTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATC
EST: TGTTCACTCCTGATGATATCTCGTTCGTTCAAAACGCTGGGGTCAAAGCG GTTCTCGTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATCEST: gi|78121834|gb|DV540218.1|DV540218
genomic: TGTTCACTCCTGATGATATCTCGTTCGTTCAAAACGCTGGGGTCAAAGCGgtaagccatg ... tctgttgtagGTTCTCGTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATC
EST: TGTTCACTCCTGATGATATTTCGTTCGTTCAAAACGCTGGGGTCAAAGCG GTTCTCGTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATCEST: gi|91870855|gb|EB401116.1|EB401116
genomic: TGTTCACTCCTGATGATATCTCGTTCGTTCAAAACGCTGGGGTCAAAGCGgtaagccatg ... tctgttgtagGTTCTCGTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATC
EST: TGTTCACTCCTGATGATATCTCGTTCGTTCAAAACGCTGGGGTCAAAGCG GTTTTCGTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATC
genomic: TGTTCACTCCTGATGATATCTCGTTCGTTCAAAACGCTGGGGTCAAAGCGgtaagccatg ... tctgttgtagGTTCTCGTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATC
ctcggtattcctttctcttcgtactgatatgactcctccgttgtgtctgttgtagGTTCTCGTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATCGCTGGGCTTTTCGGCAAAGATATCTCGCATGCTGGTGCTACCTAGAGAC
tactgat putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagccatgagacacagatacctgtaaactgacaccaggctcaactgcgactcggtattcctttctcttcgtactgatatgactcctccgttgtgtctgttgtagGTTCTCGTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATCGCTGGGCTTTTCGGCAAAGATATCTCGCATGCTGGTGCTACCTAGAGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG