1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttgtgtctacacttgctcaagtattttgaaattatgaagtcctacttgtctgtttattaagataagtttattttgtctgatgcatgtttaaaaactgaagTTATCCTTTCAAGAATGGACCCAGCAAGTGCAAGAGATGCTGAACACAAAGAAGTTTGGTGACATTGCATTTAGAGACAAGGATTTTAAGACTGCAATTG
species | Zea mays |
transcript | GRMZM2G169080_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATATTTTACTCAAAACAGGTTATAAAGATGACGAGGGTGCAGAAAACGAG TTATCCTTTCAAGAATGGACCCAGCAAGTGCAAGAGATGCTGAACACAAAGEST: gi|71437024|gb|DR818074.1|DR818074
genomic: ATATTTTACTCAAAACAGGTTATAAAGATGACGAGGGTGCAGAAAACGAGgtaactaaca ... aaaactgaagTTATCCTTTCAAGAATGGACCCAGCAAGTGCAAGAGATGCTGAACACAAAG
EST: ATATTTTACTCAAAACAGGTTATAAAGATGACGAGGGTGCAGAAAACGAG TTATCCTTTNCA-GAATGGACCCAGCAAGTGCAAGAGATGCTGAACACAAAEST: gi|101394044|gb|EB818955.1|EB818955
genomic: ATATTTTACTCAAAACAGGTTATAAAGATGACGAGGGTGCAGAAAACGAGgtaactaaca ... aaaactgaagTTATCCTTT-CAAGAATGGACCCAGCAAGTGCAAGAGATGCTGAACACAAA
EST: ATATTTTACTCAAAACAGGTTATAAAGATGACGAGGGTGCAGAAAACGAG TTATCCTTTCAAGAATGGACCCAGCAAGTGCAAGAGATGCTGAACACAAAG
genomic: ATATTTTACTCAAAACAGGTTATAAAGATGACGAGGGTGCAGAAAACGAGgtaactaaca ... aaaactgaagTTATCCTTTCAAGAATGGACCCAGCAAGTGCAAGAGATGCTGAACACAAAG
ttgtctgtttattaagataagtttattttgtctgatgcatgtttaaaaactgaagTTATCCTTTCAAGAATGGACCCAGCAAGTGCAAGAGATGCTGAACACAAAGAAGTTTGGTGACATTGCATTTAGAGACAAGGATTTTAAGACTGCAATTG
gtctgat putative branch site (score: 43)
tgtttattaagataag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtgtctacacttgctcaagtattttgaaattatgaagtcctacttgtctgtttattaagataagtttattttgtctgatgcatgtttaaaaactgaagTTATCCTTTCAAGAATGGACCCAGCAAGTGCAAGAGATGCTGAACACAAAGAAGTTTGGTGACATTGCATTTAGAGACAAGGATTTTAAGACTGCAATTG
- - - - -cacttgc
- - - - - - - - - - - - - - - - - - - - -ctacttg
- - - - - - - - - - - - - - - - - - - - - - - - tctgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagataag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgatgc