1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ctattttccccatgcgcagtggggagccgctggggctagccttactaacagtctcttattgctacatgaatactgacatttttttccaattaacacacagATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTT
species | Zea mays |
transcript | GRMZM2G168510_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACA ATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTEST: gi|60351240|gb|DN218213.1|DN218213
genomic: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACAgttaaggcat ... taacacacagATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACT
EST: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACA ATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTEST: gi|4887386|gb|AI677485.1|AI677485
genomic: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACAgttaaggcat ... taacacacagATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACT
EST: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACA ATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTEST: gi|61118196|gb|DN559157.1|DN559157
genomic: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACAgttaaggcat ... taacacacagATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACT
EST: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACA ATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTEST: gi|5296161|gb|AI783036.1|AI783036
genomic: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACAgttaaggcat ... taacacacagATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACT
EST: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACA ATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTEST: gi|60340487|gb|DN207460.1|DN207460
genomic: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACAgttaaggcat ... taacacacagATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACT
EST: CGTGGTTACCATGTTTGGCTACA ATGATCTATTTG-TGACCCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACEST: gi|91055907|gb|EB166325.1|EB166325
genomic: CGTGG-TACCATGTTTGGCTACAgttaaggcat ... taacacacagATGATCTATTTGTTGA-CCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAAC
EST: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACA ATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTEST: gi|50323772|gb|CO518898.1|CO518898
genomic: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACAgttaaggcat ... taacacacagATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACT
EST: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACA ATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTEST: gi|50323794|gb|CO518920.1|CO518920
genomic: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACAgttaaggcat ... taacacacagATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACT
EST: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACA ATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTEST: gi|71307284|gb|DR789817.1|DR789817
genomic: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACAgttaaggcat ... taacacacagATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACT
EST: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACA ATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTEST: gi|5871261|gb|AW017732.1|AW017732
genomic: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACAgttaaggcat ... taacacacagATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACT
EST: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACA ATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTEST: gi|9794838|gb|BE553146.1|BE553146
genomic: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACAgttaaggcat ... taacacacagATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACT
EST: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACA ATGATCTATTTGGTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGEST: gi|60400102|gb|DN232909.1|DN232909
genomic: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACAgttaaggcat ... taacacacagATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAG
EST: CAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACA ATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTEST: gi|74236360|gb|DT644274.1|DT644274
genomic: CAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACAgttaaggcat ... taacacacagATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACT
EST: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACA ATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTEST: gi|60396848|gb|DN229670.1|DN229670
genomic: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACAgttaaggcat ... taacacacagATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACT
EST: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACA ATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTEST: gi|6227240|gb|AW155839.1|AW155839
genomic: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACAgttaaggcat ... taacacacagATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACT
EST: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACA ATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTEST: gi|60398159|gb|DN230975.1|DN230975
genomic: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACAgttaaggcat ... taacacacagATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACT
EST: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACA ATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTEST: gi|5871277|gb|AW017748.1|AW017748
genomic: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACAgttaaggcat ... taacacacagATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACT
EST: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACA ATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTEST: gi|4887387|gb|AI677486.1|AI677486
genomic: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACAgttaaggcat ... taacacacagATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACT
EST: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTCCCATGTTTGGCTACA ATGATCTCTTTGTTGACCCAAGGAACCTTGAGTGCCTGAGGGAAAGCAACTEST: gi|61118194|gb|DN559155.1|DN559155
genomic: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACAgttaaggcat ... taacacacagATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACT
EST: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACA ATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTEST: gi|74236361|gb|DT644275.1|DT644275
genomic: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACAgttaaggcat ... taacacacagATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACT
EST: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACA ATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAACAACTEST: gi|5770206|gb|AI973380.1|AI973380
genomic: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACAgttaaggcat ... taacacacagATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACT
EST: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACA ATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTEST: gi|91050684|gb|EB161102.1|EB161102
genomic: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACAgttaaggcat ... taacacacagATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACT
EST: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACA ATGATCTATTTGTTEST: gi|31362214|gb|CD446571.1|CD446571
genomic: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACAgttaaggcat ... taacacacagATGATCTATTTGTT
EST: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACA ATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTEST: gi|60357398|gb|DN224371.1|DN224371
genomic: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACAgttaaggcat ... taacacacagATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACT
EST: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACA ATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTEST: gi|5847238|gb|AW000317.1|AW000317
genomic: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACAgttaaggcat ... taacacacagATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACT
EST: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACA ATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTEST: gi|60359317|gb|DN226290.1|DN226290
genomic: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACAgttaaggcat ... taacacacagATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACT
EST: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACA ATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTEST: gi|78022942|gb|DV491329.1|DV491329
genomic: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACAgttaaggcat ... taacacacagATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACT
EST: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACA ATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTEST: gi|71763878|gb|DR961815.1|DR961815
genomic: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACAgttaaggcat ... taacacacagATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACT
EST: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACA ATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTEST: gi|31355531|gb|CD439888.1|CD439888
genomic: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACAgttaaggcat ... taacacacagATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACT
EST: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACA ATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTEST: gi|211382425|gb|FK948866.1|FK948866
genomic: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACAgttaaggcat ... taacacacagATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACT
EST: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACA ATGATCTATTTGTTEST: gi|60355225|gb|DN222198.1|DN222198
genomic: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACAgttaaggcat ... taacacacagATGATCTATTTGTT
EST: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACA ATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTEST: gi|6828178|gb|AW331821.1|AW331821
genomic: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACAgttaaggcat ... taacacacagATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACT
EST: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACA ATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTEST: gi|71449637|gb|DR830687.1|DR830687
genomic: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACAgttaaggcat ... taacacacagATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACT
EST: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACA ATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTEST: gi|211051797|gb|FL187615.1|FL187615
genomic: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACAgttaaggcat ... taacacacagATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACT
EST: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACA ATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTEST: gi|91051935|gb|EB162353.1|EB162353
genomic: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACAgttaaggcat ... taacacacagATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACT
EST: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACA ATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTEST: gi|33101621|gb|CF061581.1|CF061581
genomic: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACAgttaaggcat ... taacacacagATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACT
EST: GGTACCATGTTTGGCTACA ATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTEST: gi|61118195|gb|DN559156.1|DN559156
genomic: GGTACCATGTTTGGCTACAgttaaggcat ... taacacacagATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACT
EST: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACA ATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTEST: gi|31361455|gb|CD445812.1|CD445812
genomic: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACAgttaaggcat ... taacacacagATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACT
EST: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACA ATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTEST: gi|4730747|gb|AI649913.1|AI649913
genomic: TGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACAgttaaggcat ... taacacacagATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACT
EST: ACCATGTTTGGCTACA ATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACT
genomic: ACCATGTTTGGCTACAgttaaggcat ... taacacacagATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACT
taacagtctcttattgctacatgaatactgacatttttttccaattaacacacagATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTT
atttttttccaattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctattttccccatgcgcagtggggagccgctggggctagccttactaacagtctcttattgctacatgaatactgacatttttttccaattaacacacagATGATCTATTTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - catgcgc
- - - - - - - - - - - - -gccgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctacatg