1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgcgtgctttatgtcctataacaaacaaatagaaactattatttcgtaaccagttactgatcttatttacactattatactgcaaattagGTCCAAGCCTTTGTTGATGCTTTAGAAGCACGCAAGATAACCGTTAGCGTTCGACGGACCCGTGGGCTTGACGCTAACGCAGCCTGTGGGCAGCTGAGGA
species | Zea mays |
transcript | GRMZM2G168412_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CCTATAACCCAATTGAAGGCTCCGAGTACAAGAGACCTTACAGAAAAGTG GTCCAAGCCTTTGTTGATGCTTTAGAAGCACGCAAGATAACCGTTAGCGTTEST: gi|71766718|gb|DR964655.1|DR964655
genomic: CCTATAACCCAATTGAAGGCTCCGAGTACAAGAGACCTTACAGAAAAGTGgtatgcgtgc ... tgcaaattagGTCCAAGCCTTTGTTGATGCTTTAGAAGCACGCAAGATAACCGTTAGCGTT
EST: CCTATAACCCAATTGAAGGCTCCGAGTACAAGAGACCTTACAGAAAAGTG GTCCAAGCCTTTGTTGATGCTTTAGAAGCACGCAAGATAACCGTTAGCGTTEST: gi|88747606|gb|DY531747.1|DY531747
genomic: CCTATAACCCAATTGAAGGCTCCGAGTACAAGAGACCTTACAGAAAAGTGgtatgcgtgc ... tgcaaattagGTCCAAGCCTTTGTTGATGCTTTAGAAGCACGCAAGATAACCGTTAGCGTT
EST: CCTATAACCCAATTGAAGGCTCCGAGTACAAGAGACCTTACAGAAAAGTG GTCCAAGCCTTTGTTGATGCTTTAGAAGCACGCAAGATAACCGTTAGCGTTEST: gi|13149611|gb|BG319933.1|BG319933
genomic: CCTATAACCCAATTGAAGGCTCCGAGTACAAGAGACCTTACAGAAAAGTGgtatgcgtgc ... tgcaaattagGTCCAAGCCTTTGTTGATGCTTTAGAAGCACGCAAGATAACCGTTAGCGTT
EST: CCTATAACCCAATTGAAGGCTCCGAGTACAAGAGACCTTACAGAAAAGTG GTCCAAGCCTTTGTTGATGCTTTAGAAGCACGCAAGATAACCGTTAGCGTTEST: gi|32940242|gb|CF045061.1|CF045061
genomic: CCTATAACCCAATTGAAGGCTCCGAGTACAAGAGACCTTACAGAAAAGTGgtatgcgtgc ... tgcaaattagGTCCAAGCCTTTGTTGATGCTTTAGAAGCACGCAAGATAACCGTTAGCGTT
EST: ACAAGAGACCTTACAGAAAAGTG GTCCAAGCCTTTGTTGATGCTTTAGAAGCACGCAAGATAACCGTTAGCGTTEST: gi|78122643|gb|DV541027.1|DV541027
genomic: ACAAGAGACCTTACAGAAAAGTGgtatgcgtgc ... tgcaaattagGTCCAAGCCTTTGTTGATGCTTTAGAAGCACGCAAGATAACCGTTAGCGTT
EST: CCTATAACCCAATTGAAGGCTCCGAGTACAAGAGACCTTACAGAAAAGTG GTCCAAGCCTTTGTTGATGCTTTAGAAGCACGCAAGATAACCGTTAGCGTTEST: gi|60345957|gb|DN212930.1|DN212930
genomic: CCTATAACCCAATTGAAGGCTCCGAGTACAAGAGACCTTACAGAAAAGTGgtatgcgtgc ... tgcaaattagGTCCAAGCCTTTGTTGATGCTTTAGAAGCACGCAAGATAACCGTTAGCGTT
EST: CCTATAACCCAATTGAAGGCTCCGAGTACAAGAGACCTTACAGAAAAGTG GTCCAAGCCTTTGTTGATGCTTTAGAAGCACGCAAGATAACCGTTAGCGTTEST: gi|71328602|gb|DR800966.1|DR800966
genomic: CCTATAACCCAATTGAAGGCTCCGAGTACAAGAGACCTTACAGAAAAGTGgtatgcgtgc ... tgcaaattagGTCCAAGCCTTTGTTGATGCTTTAGAAGCACGCAAGATAACCGTTAGCGTT
EST: CCTATAACCCAATTGAAGGCTCCGAGTACAAGAGACCTTACAGAAAAGTG GTCCAAGCCTTTGTTGATGCTTTAGAAGCACGCAAGATAACCGTTAGCGTTEST: gi|78118843|gb|DV537227.1|DV537227
genomic: CCTATAACCCAATTGAAGGCTCCGAGTACAAGAGACCTTACAGAAAAGTGgtatgcgtgc ... tgcaaattagGTCCAAGCCTTTGTTGATGCTTTAGAAGCACGCAAGATAACCGTTAGCGTT
EST: CCTATAACCCAATTGAAGGCTCCGAGTACAAGAGACCTTACAGAAAAGTG GTCCAAGCCTTTGTTGATGCTTTAGAAGCACGCAAGATAACCGTTAGCGTTEST: gi|32938957|gb|CF043776.1|CF043776
genomic: CCTATAACCCAATTGAAGGCTCCGAGTACAAGAGACCTTACAGAAAAGTGgtatgcgtgc ... tgcaaattagGTCCAAGCCTTTGTTGATGCTTTAGAAGCACGCAAGATAACCGTTAGCGTT
EST: ACAAGAGACCTTACAGAAAAGTG GTCCAAGCCTTTGTTGATGCTTTAGAAGCACGCAAGATAACCGTTAGCGTTEST: gi|76286139|gb|DV025707.1|DV025707
genomic: ACAAGAGACCTTACAGAAAAGTGgtatgcgtgc ... tgcaaattagGTCCAAGCCTTTGTTGATGCTTTAGAAGCACGCAAGATAACCGTTAGCGTT
EST: CCTATAACCCAATTGAAGGCTCCGAGTACAAGAGACCTTACAGAAAAGTG GTCCAAGCCTTTGTTGATGCTTTAGAAGCACGCAAGATAACCGTTAGCGTTEST: gi|32940213|gb|CF045032.1|CF045032
genomic: CCTATAACCCAATTGAAGGCTCCGAGTACAAGAGACCTTACAGAAAAGTGgtatgcgtgc ... tgcaaattagGTCCAAGCCTTTGTTGATGCTTTAGAAGCACGCAAGATAACCGTTAGCGTT
EST: ACAAAAGACCTTACAGAAAAGTG GTCCAAGCCTTTGTTGATGCTTTAGAAGCACGCAAGATAACCGTTAGCGTTEST: gi|76015835|gb|DT943005.1|DT943005
genomic: ACAAGAGACCTTACAGAAAAGTGgtatgcgtgc ... tgcaaattagGTCCAAGCCTTTGTTGATGCTTTAGAAGCACGCAAGATAACCGTTAGCGTT
EST: CCTATAACCCAATTGAAGGCTCCGAGTACAAGAGACCTTACAGAAAAGTG GTCCAAGCCTTTGTTGATGCTTTAGAAGCACGCAAGATAACCGTTAGCGTTEST: gi|78093019|gb|DV521393.1|DV521393
genomic: CCTATAACCCAATTGAAGGCTCCGAGTACAAGAGACCTTACAGAAAAGTGgtatgcgtgc ... tgcaaattagGTCCAAGCCTTTGTTGATGCTTTAGAAGCACGCAAGATAACCGTTAGCGTT
EST: CCTATAACCCAATTGAAGGCTCGGAGTACAAGAGACCTTACAGAAAAGTG GTCCAAGCCTTTGTTGATGCTTTAGAAGCACGCAAGATAACCGTTAGCGTT
genomic: CCTATAACCCAATTGAAGGCTCCGAGTACAAGAGACCTTACAGAAAAGTGgtatgcgtgc ... tgcaaattagGTCCAAGCCTTTGTTGATGCTTTAGAAGCACGCAAGATAACCGTTAGCGTT
ctattatttcgtaaccagttactgatcttatttacactattatactgcaaattagGTCCAAGCCTTTGTTGATGCTTTAGAAGCACGCAAGATAACCGTTAGCGTTCGACGGACCCGTGGGCTTGACGCTAACGCAGCCTGTGGGCAGCTGAGGA
tactgat putative branch site (score: 52)
ttatttacactattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcgtgctttatgtcctataacaaacaaatagaaactattatttcgtaaccagttactgatcttatttacactattatactgcaaattagGTCCAAGCCTTTGTTGATGCTTTAGAAGCACGCAAGATAACCGTTAGCGTTCGACGGACCCGTGGGCTTGACGCTAACGCAGCCTGTGGGCAGCTGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA