1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tggttatataaacattcttggtgccgtttgaatgatatgaagctaaaccaatattttcttttgcccttttaaatatacaatcatttttgtgtgtgtatagGTTCTTGCCTTCAATGGCACACCGGTTAAAAATTTGAAGCACCTAGCGACCATGGTGGAAGAGTGCAATGAAGCATTCTTGAAGTTTGATCTGGACTTCG
species | Zea mays |
transcript | GRMZM2G165969_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGCTTGTGGCTGATATAAACATTGGTTACGAAGATATAGTCAACATTCAG GTTCTTGCCTTCAATGGCACACCGGTTAAAAATTTGAAGCACCTAGCGACCEST: gi|32834126|gb|CD973804.1|CD973804
genomic: TGCTTGTGGCTGATATAAACATTGGTTACGAAGATATAGTCAACATTCAGgtaatagtag ... gtgtgtatagGTTCTTGCCTTCAATGGCACACCGGTTAAAAATTTGAAGCACCTAGCGACC
EST: TGCTTGTGGCTGATATAAACATTGGTTACGAAGATATAGTCAACATTCAG GTTCTTGCCTTCAATGGCACACCGGTTAAAAATTTGAAGCACCTAGCGACCEST: gi|33091610|gb|CF051604.1|CF051604
genomic: TGCTTGTGGCTGATATAAACATTGGTTACGAAGATATAGTCAACATTCAGgtaatagtag ... gtgtgtatagGTTCTTGCCTTCAATGGCACACCGGTTAAAAATTTGAAGCACCTAGCGACC
EST: TGCTTGTGGCTGATATAAACATTGGTTACGAAGATATAGTCAACATTCAG GTTCTTGCCTTCAATGGCACACCGGTTAAAAATTTGAAGCACCTAGCGACCEST: gi|32832305|gb|CD971983.1|CD971983
genomic: TGCTTGTGGCTGATATAAACATTGGTTACGAAGATATAGTCAACATTCAGgtaatagtag ... gtgtgtatagGTTCTTGCCTTCAATGGCACACCGGTTAAAAATTTGAAGCACCTAGCGACC
EST: TGCTTGTGGCTGATATAAACATTGGTTACGAAGATATAGTCAACATTCAG GTTCTTGCCTTCAATGGCACACCGGNTAAAAATTTGAAGCACCTEST: gi|32831923|gb|CD971601.1|CD971601
genomic: TGCTTGTGGCTGATATAAACATTGGTTACGAAGATATAGTCAACATTCAGgtaatagtag ... gtgtgtatagGTTCTTGCCTTCAATGGCACACCGGTTAAAAATTTGAAGCACCT
EST: TGCTTGTGGCTGATATAAACATTGGTTACGAAGATATAGTCAACATTCAG GTTCTTGCCTTCAATGGCACACCGGTTAAAAATTTGAAGCACCTAGCGACCEST: gi|32832217|gb|CD971895.1|CD971895
genomic: TGCTTGTGGCTGATATAAACATTGGTTACGAAGATATAGTCAACATTCAGgtaatagtag ... gtgtgtatagGTTCTTGCCTTCAATGGCACACCGGTTAAAAATTTGAAGCACCTAGCGACC
EST: TGCTTGTGGCTGATATAAACATTGGTTACGAAGATATAGTCAACATTCAG GTTCTTGCCTTCAATGGCACACCGGATAAAAATTTGAAGCACCTAGCGACCEST: gi|32832159|gb|CD971837.1|CD971837
genomic: TGCTTGTGGCTGATATAAACATTGGTTACGAAGATATAGTCAACATTCAGgtaatagtag ... gtgtgtatagGTTCTTGCCTTCAATGGCACACCGGTTAAAAATTTGAAGCACCTAGCGACC
EST: TGCTTGTGGCTGATATAAACATTGGTTACGAAGATATAGTCAACATTCAG GTTCTTGCCTTCAATGGCACACCGGTTAAAAATTTGAAGCACCTAGCGACCEST: gi|32833886|gb|CD973564.1|CD973564
genomic: TGCTTGTGGCTGATATAAACATTGGTTACGAAGATATAGTCAACATTCAGgtaatagtag ... gtgtgtatagGTTCTTGCCTTCAATGGCACACCGGTTAAAAATTTGAAGCACCTAGCGACC
EST: TGCTTGTGGCTGATATAAACATTGGTTACGAAGATATAGTCAACATTCAG GTTCTTGCCTTCAATGGCACACCGGTTAAAAATTTGAAGCACCTAGCGACCEST: gi|32850028|gb|CD989709.1|CD989709
genomic: TGCTTGTGGCTGATATAAACATTGGTTACGAAGATATAGTCAACATTCAGgtaatagtag ... gtgtgtatagGTTCTTGCCTTCAATGGCACACCGGTTAAAAATTTGAAGCACCTAGCGACC
EST: TGCTTGTGGCTGATATAAACATTGGTTACGAAGATATAGTCAACATTCAG GTTCTTGCCTTCAATGGCACACCGGTTAAAAATTTGAAGCACCTAGCGACCEST: gi|32832780|gb|CD972458.1|CD972458
genomic: TGCTTGTGGCTGATATAAACATTGGTTACGAAGATATAGTCAACATTCAGgtaatagtag ... gtgtgtatagGTTCTTGCCTTCAATGGCACACCGGTTAAAAATTTGAAGCACCTAGCGACC
EST: TGCTTGTGGCTGATATAAACATTGGTTACGAAGATATAGTCAACATTCAG GTTCTTGCCTTCAATGGCACACCGGTTAAAAATTTGAAGCACCTAGCGACCEST: gi|32833979|gb|CD973657.1|CD973657
genomic: TGCTTGTGGCTGATATAAACATTGGTTACGAAGATATAGTCAACATTCAGgtaatagtag ... gtgtgtatagGTTCTTGCCTTCAATGGCACACCGGTTAAAAATTTGAAGCACCTAGCGACC
EST: TGCTTGTGGCTGATATAAACATTGGTTACGAAGATATAGTCAACATTCAG GTTCTTGCCTTCAATGGCACACCGGTTAAAAATTTGAAGCACCTAGCGACCEST: gi|32931506|gb|CF036318.1|CF036318
genomic: TGCTTGTGGCTGATATAAACATTGGTTACGAAGATATAGTCAACATTCAGgtaatagtag ... gtgtgtatagGTTCTTGCCTTCAATGGCACACCGGTTAAAAATTTGAAGCACCTAGCGACC
EST: TGCTTGTGGCTGATATAAACATTGGTTACGAAGATATAGTCAACATTCAG GTTCTTGCCTTCAATGGCACACCGGTTAAAAATTTGAAGCACCTAGCGACC
genomic: TGCTTGTGGCTGATATAAACATTGGTTACGAAGATATAGTCAACATTCAGgtaatagtag ... gtgtgtatagGTTCTTGCCTTCAATGGCACACCGGTTAAAAATTTGAAGCACCTAGCGACC
aaccaatattttcttttgcccttttaaatatacaatcatttttgtgtgtgtatagGTTCTTGCCTTCAATGGCACACCGGTTAAAAATTTGAAGCACCTAGCGACCATGGTGGAAGAGTGCAATGAAGCATTCTTGAAGTTTGATCTGGACTTCG
agctaaa putative branch site (score: 3)
ttttaaatatacaatc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggttatataaacattcttggtgccgtttgaatgatatgaagctaaaccaatattttcttttgcccttttaaatatacaatcatttttgtgtgtgtatagGTTCTTGCCTTCAATGGCACACCGGTTAAAAATTTGAAGCACCTAGCGACCATGGTGGAAGAGTGCAATGAAGCATTCTTGAAGTTTGATCTGGACTTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG