1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgagttagttgtgttattcatatctaacctctaatcccatcctatagtttcaccttactctcctggtttcagGGTTTCAATGGGGCTGATCTTCGGAACGTGTGCACCGAAGCTGGCATGGCTGCAATTCGTGCAGAGAGAGATTACGTAGTCCACGAAGACTTCATGAAG
species | Zea mays |
transcript | GRMZM2G165817_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCGCCAAGCATGGGGAGATTGATTATGAAGCAGTCGTGAAACTAGCTGAA GGTTTCA-TGGGGCTGATCTTCGGAACGTGTGCACCGAAGCTGGCATGGCTEST: gi|211472647|gb|FL103084.1|FL103084
genomic: TCGCCAAGCATGGGGAGATTGATTATGAAGCAGTCGTGAAACTAGCTGAAgtgagttagt ... ctggtttcagGGTTTCAATGGGGCTGATCTTCGGAACGTGTGCACCGAAGCTGGCATGGCT
EST: TCGCCAAGCATGGGGAGATTGATTATGAAGCAGTCGTGAAACTAGCTGAA GGTTTCAATGGGGCTGATCTTCGGAACGTGTGCACCGAAGCTGGCATGGCTEST: gi|211475170|gb|FL103103.1|FL103103
genomic: TCGCCAAGCATGGGGAGATTGATTATGAAGCAGTCGTGAAACTAGCTGAAgtgagttagt ... ctggtttcagGGTTTCAATGGGGCTGATCTTCGGAACGTGTGCACCGAAGCTGGCATGGCT
EST: TCGCCAAGCATGGGGAGATTGATTATGAAGCAGTCGTGAAACTAGCTGAA GGTTTCAATGGGGCTGATCTTCGGAACGTGTGCACCGAAGCTGGCATGGCTEST: gi|37374242|gb|CF623465.1|CF623465
genomic: TCGCCAAGCATGGGGAGATTGATTATGAAGCAGTCGTGAAACTAGCTGAAgtgagttagt ... ctggtttcagGGTTTCAATGGGGCTGATCTTCGGAACGTGTGCACCGAAGCTGGCATGGCT
EST: TCGCCAAGCATGGGGAGATTGATTATGAAGCAGTCGTGAAACTAGCTGAA GGTTTCAATGGGGCTGATCTTCGGAACGTGTGCACCGAAGCTGGCATGGCTEST: gi|113702338|gb|EE679842.1|EE679842
genomic: TCGCCAAGCATGGGGAGATTGATTATGAAGCAGTCGTGAAACTAGCTGAAgtgagttagt ... ctggtttcagGGTTTCAATGGGGCTGATCTTCGGAACGTGTGCACCGAAGCTGGCATGGCT
EST: TCGCCAAGCATGGGGAGATTGATTATGAAGCAGTCGTGAAACTAGCTGAA GGTTTCAATGGGGCTGATCTTCGGAACGTGTGCACCGAAGCTGGCATGGCTEST: gi|7145297|gb|AW506778.1|AW506778
genomic: TCGCCAAGCATGGGGAGATTGATTATGAAGCAGTCGTGAAACTAGCTGAAgtgagttagt ... ctggtttcagGGTTTCAATGGGGCTGATCTTCGGAACGTGTGCACCGAAGCTGGCATGGCT
EST: TCGCCAAGCATGGGGAGATTGATTATGAAGCAGTCGTGAAACTAGCTGAA GGTTTCAATGGGGCTGATCTTCGGAACGTGTGCACCGAAGCTGGCATGGCTEST: gi|6031373|gb|AW076230.1|AW076230
genomic: TCGCCAAGCATGGGGAGATTGATTATGAAGCAGTCGTGAAACTAGCTGAAgtgagttagt ... ctggtttcagGGTTTCAATGGGGCTGATCTTCGGAACGTGTGCACCGAAGCTGGCATGGCT
EST: TCGCCAAGCATGGGGAGATTGATTATGAAGCAGTCGNGAAACTAGCTGAA GGTTTCAATGGGGCTGATCTTCGGAACEST: gi|19770067|gb|BQ034788.1|BQ034788
genomic: TCGCCAAGCATGGGGAGATTGATTATGAAGCAGTCGTGAAACTAGCTGAAgtgagttagt ... ctggtttcagGGTTTCAATGGGGCTGATCTTCGGAAC
EST: TCGCCAAGCATGGGGAGATTGATTATGAAGCAGTCGTGAAACTAGCTGAA GGTTTCAATGGGGCTGATCTTCGGAACGTGTGCACCGAAGCTGGCATGGCTEST: gi|6445587|gb|AW179550.1|AW179550
genomic: TCGCCAAGCATGGGGAGATTGATTATGAAGCAGTCGTGAAACTAGCTGAAgtgagttagt ... ctggtttcagGGTTTCAATGGGGCTGATCTTCGGAACGTGTGCACCGAAGCTGGCATGGCT
EST: GATTATGAAGCAGTCGTGAAACTAGCTGAA GGTTTCAATGGGGCTGATCTTCGGAACGTGTGCACCGAAGCTGGCATGGCTEST: gi|5871417|gb|AW017888.1|AW017888
genomic: GATTATGAAGCAGTCGTGAAACTAGCTGAAgtgagttagt ... ctggtttcagGGTTTCAATGGGGCTGATCTTCGGAACGTGTGCACCGAAGCTGGCATGGCT
EST: TCGCCAAGCATGGGGAGATTGATTATGAAGCAGTCGTGAAACTAGCTGAA GGTTTCAATGGGGCTGATCTTCGGAACGTGTGCACCGAAGCTGGCATGGCTEST: gi|211475158|gb|FL103091.1|FL103091
genomic: TCGCCAAGCATGGGGAGATTGATTATGAAGCAGTCGTGAAACTAGCTGAAgtgagttagt ... ctggtttcagGGTTTCAATGGGGCTGATCTTCGGAACGTGTGCACCGAAGCTGGCATGGCT
EST: TCGCCAAGCATGGGGAGATTGATTATGAAGCAGTCGTGAAACTAGCTGAA GGTTTCAATGGGGCTGATCTTCGGAACGTGTGCACCGAAGCTGGCATGGCTEST: gi|21432254|gb|BQ547744.1|BQ547744
genomic: TCGCCAAGCATGGGGAGATTGATTATGAAGCAGTCGTGAAACTAGCTGAAgtgagttagt ... ctggtttcagGGTTTCAATGGGGCTGATCTTCGGAACGTGTGCACCGAAGCTGGCATGGCT
EST: TCGCCAAGCATGGGGAGATTGATTATGAAGCAGTCGTGAAACTAGCTGAA GGTTTCAATGGGGCTGATCTTCGGAACGTGTGCACCGAAGCTGGCATGGCTEST: gi|15427178|gb|BI543000.1|BI543000
genomic: TCGCCAAGCATGGGGAGATTGATTATGAAGCAGTCGTGAAACTAGCTGAAgtgagttagt ... ctggtttcagGGTTTCAATGGGGCTGATCTTCGGAACGTGTGCACCGAAGCTGGCATGGCT
EST: TCGCCAAGCATGGGGAGATTGATTATGAAGCAGTCGTGAAACTAGCTGAA GGTTTCAATGGGGCTGATCTTCGGAACGTGTGCACCGAAGCTGGCATGGCTEST: gi|4966712|gb|AI691568.1|AI691568
genomic: TCGCCAAGCATGGGGAGATTGATTATGAAGCAGTCGTGAAACTAGCTGAAgtgagttagt ... ctggtttcagGGTTTCAATGGGGCTGATCTTCGGAACGTGTGCACCGAAGCTGGCATGGCT
EST: TCGCCAAGCATGGGGAGATTGATTATGAAGCAGTCGTGAAACTAGCTGAA GGTTTCAATGGGGCTGATCTTCGGAACGTGTGCACCGAAGCTGGCATGGCTEST: gi|30087282|gb|CB885490.1|CB885490
genomic: TCGCCAAGCATGGGGAGATTGATTATGAAGCAGTCGTGAAACTAGCTGAAgtgagttagt ... ctggtttcagGGTTTCAATGGGGCTGATCTTCGGAACGTGTGCACCGAAGCTGGCATGGCT
EST: TCGCCAAGCATGGGGAGATTGATTATGAAGCAGTCGTGAAACTAGCTGAA GGTTTCAATGGGGCTGATCTTCGGAACGTGTGCACCGAAGCTGGCATGGCTEST: gi|7145298|gb|AW506779.1|AW506779
genomic: TCGCCAAGCATGGGGAGATTGATTATGAAGCAGTCGTGAAACTAGCTGAAgtgagttagt ... ctggtttcagGGTTTCAATGGGGCTGATCTTCGGAACGTGTGCACCGAAGCTGGCATGGCT
EST: TCGCCAAGCATGGGGAGATTGATTATGAAGCAGTCGTGAAACTAGCTGAA GGTTTCAATGGGGCTGATCTTCGGAACGTGTGCACCGAAGCTGGCATGGCTEST: gi|37400602|gb|CF637657.1|CF637657
genomic: TCGCCAAGCATGGGGAGATTGATTATGAAGCAGTCGTGAAACTAGCTGAAgtgagttagt ... ctggtttcagGGTTTCAATGGGGCTGATCTTCGGAACGTGTGCACCGAAGCTGGCATGGCT
EST: TCGCCAAGCATGGGGAGATTGATTATGAAGCAGTCGTGAAACTAGCTGAA GGTTTCAATGGGGCTGATCTTCGGAACGTGTGCACCGAAGCTGGCATGGCTEST: gi|60340244|gb|DN207217.1|DN207217
genomic: TCGCCAAGCATGGGGAGATTGATTATGAAGCAGTCGTGAAACTAGCTGAAgtgagttagt ... ctggtttcagGGTTTCAATGGGGCTGATCTTCGGAACGTGTGCACCGAAGCTGGCATGGCT
EST: TCGCCAAGCATGGGGAGATTGATTATGAAGCAGTCGTGAAACTAGCTGAA GGTTTCAATGGGGCTGATCTTCGGAACGTGTGCACCGAAGCTGGCATGGCTEST: gi|45847148|gb|CN071091.1|CN071091
genomic: TCGCCAAGCATGGGGAGATTGATTATGAAGCAGTCGTGAAACTAGCTGAAgtgagttagt ... ctggtttcagGGTTTCAATGGGGCTGATCTTCGGAACGTGTGCACCGAAGCTGGCATGGCT
EST: TCGCCAAGCATGGGGAGATTGATTATGAAGCAGTCGTGAAACTAGCTGAA GGTTTCAATGGGGCTGATCTTCGGAACGTGTGCACCGAAGCTGGCATGGCT
genomic: TCGCCAAGCATGGGGAGATTGATTATGAAGCAGTCGTGAAACTAGCTGAAgtgagttagt ... ctggtttcagGGTTTCAATGGGGCTGATCTTCGGAACGTGTGCACCGAAGCTGGCATGGCT
tcatatctaacctctaatcccatcctatagtttcaccttactctcctggtttcagGGTTTCAATGGGGCTGATCTTCGGAACGTGTGCACCGAAGCTGGCATGGCTGCAATTCGTGCAGAGAGAGATTACGTAGTCCACGAAGACTTCATGAAG
tttcaccttactctcc CT-rich tract
tatagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttagttgtgttattcatatctaacctctaatcccatcctatagtttcaccttactctcctggtttcagGGTTTCAATGGGGCTGATCTTCGGAACGTGTGCACCGAAGCTGGCATGGCTGCAATTCGTGCAGAGAGAGATTACGTAGTCCACGAAGACTTCATGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA