1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaagtaacattgatctttatcgaataaatgcttgttttttttatgttagtacaaaccaattctaaaccagaaatgcatttcatacagGCAGCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACCACTGTTGCTGCTAGATTGGATGCTCAGCAGAAAAAGCTCAACCTTCCTGTCCTTCCCACAA
species | Zea mays |
transcript | GRMZM2G165747_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CCTCAAGGAGATCATCACCTAGAGTGACAAACGAGGAGGTCCAAAAGGCT GCAGCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACCACTGTTGCTGCTEST: gi|31361660|gb|CD446017.1|CD446017
genomic: CCTCAAGGAGATCATCACCTAGAGTGACAAACGAGGAGGTCCAAAAGGCTgtaagtaaca ... tttcatacagGCAGCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACCACTGTTGCTGCT
EST: CCTCAAGGAGATCATCACCTAGAGTGACAAACGAGGAGGTCCAAAAGGCT GCAGCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACCACTGTTGCTGCTEST: gi|31361689|gb|CD446046.1|CD446046
genomic: CCTCAAGGAGATCATCACCTAGAGTGACAAACGAGGAGGTCCAAAAGGCTgtaagtaaca ... tttcatacagGCAGCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACCACTGTTGCTGCT
EST: CCTCAAGGAGATCATCACCTAGAGTGACAAACGAGGAGGTCCAAAAGGCT GCAGCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACCACTGTTGCTGCTEST: gi|33101979|gb|CF061939.1|CF061939
genomic: CCTCAAGGAGATCATCACCTAGAGTGACAAACGAGGAGGTCCAAAAGGCTgtaagtaaca ... tttcatacagGCAGCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACCACTGTTGCTGCT
EST: CCTCAAGGAGATCATCACCTAGAGTGACAAACGAGGAGGTCCAAAAGGCT GCAGCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACCACTGTTGCTGCTEST: gi|31355054|gb|CD439411.1|CD439411
genomic: CCTCAAGGAGATCATCACCTAGAGTGACAAACGAGGAGGTCCAAAAGGCTgtaagtaaca ... tttcatacagGCAGCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACCACTGTTGCTGCT
EST: CCTCAAGGAGATCATCACCTAGAGTGACAAACGAGGAGGTCCAAAAGGCT GCAGCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACCACTGTTGCTGCT
genomic: CCTCAAGGAGATCATCACCTAGAGTGACAAACGAGGAGGTCCAAAAGGCTgtaagtaaca ... tttcatacagGCAGCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACCACTGTTGCTGCT
tgttttttttatgttagtacaaaccaattctaaaccagaaatgcatttcatacagGCAGCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACCACTGTTGCTGCTAGATTGGATGCTCAGCAGAAAAAGCTCAACCTTCCTGTCCTTCCCACAA
ttctaaa putative branch site (score: 2)
tttttatgttagta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaacattgatctttatcgaataaatgcttgttttttttatgttagtacaaaccaattctaaaccagaaatgcatttcatacagGCAGCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACCACTGTTGCTGCTAGATTGGATGCTCAGCAGAAAAAGCTCAACCTTCCTGTCCTTCCCACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA