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...cctagacaactaaggctgtagcctatgtataacatatgctaataatttatattgcagaagttattatatgttttatgagttaacaaaggcctaaaaacagATTTGAGGAACATGAAGCACCTGGATCAAGATCCTTCTTTACAGAAATTATTGCATCAATTTCTGATATAAAGTTTTCAAGGAATGGCAAATATATTCTT
species | Zea mays |
transcript | GRMZM2G165418_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CGACTTATTGATCTGCGCCAATCAGCACTGTGTGACAACCATTCAAAAAT ATTTGAGGAACATGAAGCACCTGGATCAAGATCCTTCTTTACAGAAATTATEST: gi|211384024|gb|FL015619.1|FL015619
genomic: CGACTTATTGATCTGCGTCAATCAGCACTGTGTGACAACCATTCAAAAATgttagtaacc ... ctaaaaacagATTTGAGGAACATGAAGCACCTGGATCAAGATCCTTCTTTACAGAAATTAT
EST: CGACTTATTGATCTGCGTCAATCAGCACTGTGTGACAACCATTCAAAAAT ATTTGAGGAACATGAAGCACCTGGATCAAGATCCTTCTTTACAGAAATTATEST: gi|24934206|gb|CA452424.1|CA452424
genomic: CGACTTATTGATCTGCGTCAATCAGCACTGTGTGACAACCATTCAAAAATgttagtaacc ... ctaaaaacagATTTGAGGAACATGAAGCACCTGGATCAAGATCCTTCTTTACAGAAATTAT
EST: CGACTTATTGATCTGCGTCAATCAGCACTGTGTGACAACCATTCAAAAAT ATTTGAGGAACATGAAGCACCTGGATCAAGATCCTTCTTTACAGAAATTATEST: gi|211386654|gb|FL015627.1|FL015627
genomic: CGACTTATTGATCTGCGTCAATCAGCACTGTGTGACAACCATTCAAAAATgttagtaacc ... ctaaaaacagATTTGAGGAACATGAAGCACCTGGATCAAGATCCTTCTTTACAGAAATTAT
EST: CGACTTATTGATCTGCGTCAATCAGCACTGTGTGACAACCATTCAAAAAT ATTTGAGGAACATGAAGCACCTGGATCAAGATCCTTCTTTACAGAAATTATEST: gi|211386649|gb|FL015622.1|FL015622
genomic: CGACTTATTGATCTGCGTCAATCAGCACTGTGTGACAACCATTCAAAAATgttagtaacc ... ctaaaaacagATTTGAGGAACATGAAGCACCTGGATCAAGATCCTTCTTTACAGAAATTAT
EST: CGACTTATTGATCTGCGTCAATCAGCACTGTGTGACAACCATTCAAAAAT ATTTGAGGAACATGAAGCACCTGGATCAAGATCCTTCTTTACAGAAATTATEST: gi|67025874|gb|CO454623.1|CO454623
genomic: CGACTTATTGATCTGCGTCAATCAGCACTGTGTGACAACCATTCAAAAATgttagtaacc ... ctaaaaacagATTTGAGGAACATGAAGCACCTGGATCAAGATCCTTCTTTACAGAAATTAT
EST: CGACTTATTGATCTGCGTCAATCAGCACTGTGTGACAACCATTCAAAAAT ATTTGAGGAACATGAAGCACCTGGATCAAGATCCTTCTTTACAGAAATTAT
genomic: CGACTTATTGATCTGCGTCAATCAGCACTGTGTGACAACCATTCAAAAATgttagtaacc ... ctaaaaacagATTTGAGGAACATGAAGCACCTGGATCAAGATCCTTCTTTACAGAAATTAT
tttatattgcagaagttattatatgttttatgagttaacaaaggcctaaaaacagATTTGAGGAACATGAAGCACCTGGATCAAGATCCTTCTTTACAGAAATTATTGCATCAATTTCTGATATAAAGTTTTCAAGGAATGGCAAATATATTCTT
gcctaaa putative branch site (score: 3)
ttattatatgttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctagacaactaaggctgtagcctatgtataacatatgctaataatttatattgcagaagttattatatgttttatgagttaacaaaggcctaaaaacagATTTGAGGAACATGAAGCACCTGGATCAAGATCCTTCTTTACAGAAATTATTGCATCAATTTCTGATATAAAGTTTTCAAGGAATGGCAAATATATTCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA