Sequence
atgc intronic sequence ATGC exonic sequencegtaagcgtgtgaaaggggattctgctatttggtggtatcctgaattttgctggttatagcatgttggtttcttctgcaaatagGTTGCGCGTGGCGACAAGACCGACGAGGATGGTGTGCCCATGCTGCTAAAAATCCCGCGAATGTTTGATCCATGGGGTGGATACAGCATCATTGGCTTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G165351_T03 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os06g51430.1 (Oryza sativa), 3'ss of exon 10
---------gtaagcgtgtgaaaggggattctgctatttggtggtatcctgaattttgctggttatagcatgttggtttcttctgcaaatagGTTGCGCGTGGCGACAAGACCGACGAGGATGGTGTGCCCATGCTGCTAAAAATCCCGCGAATGTTTGATCCATGGGGTGGATACAGCATCATTGGCTTTG
|| | | | ||||| || |||||| | || | || ||| | ||| |||| | | |||| ||| || ||||| |||||||| || || || || || |||||| | |||||||| || |||||||||||||||||||| ||||||||||||||||| || |
gtaagttttgtggaaatttattctagacttctggtaattggtgatctcattgtttaagctaagttggttatgctggtgtgcttctcaaa--gGTAGCTCGTGGTGACAAGACTGATGAAGACGGCGTCCCCATGTTACTAAAAATTCCACGAATGTTTGATCCATGGGGAGGATACAGCATCATTGGATTCG
upper sequence: GRMZM2G165351_T03 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA01G42940.1 (Glycine max), 3'ss of exon 10
----gtaagcgtgtgaaaggggattctgctatttggtggtatcctgaat-tttgctggttatagcatg--ttggtttcttctgcaaatagGTTGCGCGTGGCGACAAGACCGACGAGGATGGTGTGCCCATGCTGCTAAAAATCCCGCGAATGTTTGATCCATGGGGTGGATACAGCATCATTGGCTTTG
||| || | | || | | | | ||| | ||| || || || | || ||| | || |||||| || || ||||| | | || ||||| | |||||| | || || |||| || || ||||||||||||||||| ||||||||||| || ||||
gttagtatatgttctattctaattcatgacaatcactatcaccctatgtatttactaattttaattttgcttactttttactcaccatagGTGGCCCGAGGCGATCGAAGTGGAGAAGATGGAATTCCCATGTTACTGAAGTTCCCTCGGATTTTTGATCCATGGGGTGGTTACAGCATCATAGGTTTTG
upper sequence: GRMZM2G165351_T03 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA18G46760.1 (Glycine max), 3'ss of exon 10
------------------------------gtaagcgtgtgaaaggggattctgctatttggtggtatcctgaattttgctggtta---tagcatgttggtttcttctgcaaatagGTTGCGCGTGGCGACAAGACCGACGAGGATGGTGTGCCCATGCTGCTAAAAATCCCGCGAATGTTTGATCCATGGGGTGGATACAGCATCATTGGCTTTG
| | || | | | ||| | | | ||| || ||| || |||| | |||| || || || || | || | || |||||| | || ||||| || || || || || ||||||||||| |||||||| |||||||||||||| ||||
gtgagtgatttcgaggaagatctcccttagactattcttcacaaagcttgttttttatctcataaaacatgatgcttttcttattaaactaatgcaacattttcacttctttgcagGTAGCTCGAGGTGATAGGAGTGGAGAAGATGGTATCCCTATGCTACTCAAGATACCACGTATGTTTGATCCCTGGGGTGGTTACAGCATCATTGGTTTTG
upper sequence: GRMZM2G165351_T03 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA11G02540.1 (Glycine max), 3'ss of exon 10
gtaagcgtg----tgaaaggggattc-tgctatttggtggtatcctgaat-tttgctggttatagcatgt--tggtttcttctgcaaatagGTTGCGCGTGGCGACAAGACCGACGAGGATGGTGTGCCCATGCTGCTAAAAATCCCGCGAATGTTTGATCCATGGGGTGGATACAGCATCATTGGCTTTG
|| || | | | |||| || | | | | ||| | ||| || || || | | | ||| | || |||||| || || || || | | || ||||| | |||||| | || || |||| || || ||||||||||||||||| ||||||||||| || ||||
gttagtattatgctctattctaattcatgacaatcactatcaccctatgtatttactaattttaatttttcttactttttactcaccatagGTAGCCCGAGGTGATCGAAGTGGAGAAGATGGAATTCCCATGTTACTGAAGTTCCCTCGTATTTTTGATCCATGGGGTGGTTACAGCATCATAGGTTTTG
upper sequence: GRMZM2G165351_T03 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA09G39500.1 (Glycine max), 3'ss of exon 10
------------------------------gtaagcgtgtgaaaggggattctgctatttggtggtatcctgaat--tttgctggtta---tagcatgttggtttcttctgcaaatagGTTGCGCGTGGCGACAAGACCGACGAGGATGGTGTGCCCATGCTGCTAAAAATCCCGCGAATGTTTGATCCATGGGGTGGATACAGCATCATTGGCTTTG
|| || | || || | | || | || ||| || ||| || |||| | |||| || || || || | || | || |||||| | || ||||| || || || || || ||||||||||| |||||||| |||||||||||||| ||||
gtgagtgatttcttggaagatctcccttcgacaatatcacaaagcttgtttttgatctcataatacatgattgatgcttttcttattaaactaatgcaacattttcacttctttgcagGTAGCTCGAGGTGATAGGAGTGGAGAAGATGGTATCCCTATGCTACTCAAGATACCACGTATGTTTGATCCTTGGGGTGGTTACAGCATCATTGGTTTTG
upper sequence: GRMZM2G165351_T03 (Zea mays), 3'ss of exon 8
lower sequence: AT1G01650.1 (Arabidopsis thaliana), 3'ss of exon 10
---------------------------------------------gtaagcgtgtgaaaggggattctgctatttggtggtatc---ctgaattttgctggttatagcatgttggtttc-----ttctgcaaatagGTTGCGCGTGGCGACAAGACCGACGAGGATGGTGTGCCCATGCTGCTAAAAATCCCGCGAATGTTTGATCCATGGGGTGGATACAGCATCATTGGCTTTG
|| || | || | ||| || | | |||| || | | || | | || || | | | || |||||| || ||||| |||| | || ||||| || | || ||||| ||||| ||||| |||||||||||||| |||||||| |||||||| ||||| ||||
gtaagtttttcttttttgctccagaccatcatgcaagaagactttgttagatattccaactacacatacttatctgtctgctccacactgatattatcggagaattgtacgtcttttcccattttcccacatatagGTAGCCCGTGGTGACAGAAGCGGAGAGGACGGAATTCCAATGCTACTAAAGATCCCACGAATGTTTGATCCTTGGGGTGGCTACAGCATAATTGGATTTG
upper sequence: GRMZM2G165351_T03 (Zea mays), 3'ss of exon 8
lower sequence: Vv02s0025g03400.t01 (Vitis vinifera), 3'ss of exon 10
----------------------------gtaagcgtgtgaaaggggattctgctatttggtggtatcctgaattttgctggttatagcatgttggtttcttctgcaaatagGTTGCGCGTGGCGACAAGACCGACGAGGATGGTGTGCCCATGCTGCTAAAAATCCCGCGAATGTTTGATCCATGGGGTGGATACAGCATCATTGGCTTTG
| | || | | | ||| || | | | | ||| | || | ||||| | | | |||||| || ||||| || | | | |||||||| | || ||||| || || ||||| || |||||||||||||||||||| ||||| |||||||||||||
gtaagtactgcttttttcacccatatgctagaccatggttattgtggttcaaataatgtgcagactttcaaatactaaaaagcattataaattggtcatgtttttatatagGTAGCTCGTGGTGATAGAAGTGGACAGGATGGTATTCCTATGCTACTGAAGATCCCCCGCATGTTTGATCCATGGGGTGGTTACAGTATCATTGGCTTTG
upper sequence: GRMZM2G165351_T03 (Zea mays), 3'ss of exon 8
lower sequence: Vv15s0046g02460.t01 (Vitis vinifera), 3'ss of exon 10
----------------------gtaagcgtgtgaaaggg---gattctgctatttggtggtatcctgaattt-tgctg----gttatag---catgttggtttcttctgcaaatagGTTGCGCGTGGCGACAAGACCGACGAGGATGGTGTGCCCATGCTGCTAAAAATCCCGCGAATGTTTGATCCATGGGGTGGATACAGCATCATTGGCTTTG
|| ||| || || | ||| | ||||| || | ||||| ||| || |||| | | || | |||||| || ||||| || | || | ||||||||| | || ||||| || || |||||||||||||||||||| |||||||| |||||||||||||| ||||
gtaagtagtttctccaaaacttgttagcccaccaatacatttgaaacggctgatgtttggtacttgagatctctgctgcccaattacagaattatgtaattgtgttttctgtatagGTAGCTCGTGGTGATAGGAGTGGGGAGGATGGTATTCCGATGCTACTGAAGATCCCGCGAATGTTTGATCCTTGGGGTGGCTACAGCATCATTGGATTTG
upper sequence: GRMZM2G165351_T03 (Zea mays), 3'ss of exon 8
lower sequence: PP1S124_16V6.1 (Physcomitrella patens), 3'ss of exon 10
-------------------------------------------------------------------------------------------------------gtaagcgtgtgaaaggggattctgctatttggtggtatcctgaattttgctggttatagcatgttggtt----tcttctgcaaatagGTTGCGCGTGGCGACAAGACCGACGAGGATGGTGTGCCCATGCTGCTAAAAATCCCGCGAATGTTTGATCCATGGGGTGGATACAGCATCATTGGCTTTG
| | | | || | | || | | |||||| | | | ||| | || | ||||| | ||||||| || || || |||||| | | || ||| | || ||||| || ||| | || || | ||||||||||||||||| ||||| |||||||| ||||
gtatgttcatcaatctggcttttcctatttaagacgcgcgtttttgaaattgtttcgacttctaggttgtgaactattgagtgctttgacaaatgtcgtctttttcatcacttcaagctgacgatcggtagcttg-ggtatcacaatacacaagtgctgagatatgacgattgaacttttctg-ggacagGTTGCTCGGGGAGATAAGACCAATGGAGAGGGTATTCCTATGCTTCTTAAAGTTCCACGTCTTTTTGATCCATGGGGTGGCTACAGTATCATTGGTTTTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32843028|gb|CD982709.1|CD982709EST: TCTGGGTGTTTATCTCCAAGAGATGGTTTCATGAGAGCGTGATGATTGTG GTTGCGCGTGGCGACAAGACCGACGAGGATGGTGTGCCCATGCTGCTAAAA
genomic: TCTGGGTGTTTATCTCCAAGAGATGGTTTCATGAGAGCGTGATGATTGTGgtaagcgtgt ... ctgcaaatagGTTGCGCGTGGCGACAAGACCGACGAGGATGGTGTGCCCATGCTGCTAAAA
EST:
gi|32848049|gb|CD987730.1|CD987730EST: TCTGGGTGTTTATCTCCAAGAGATGGTTTCATGAGAGCGTGATGATTGTG GTTGCGCGTGGCGACAAGACCGACGAGGATGGTGTGCCCATGCTGCTAAAA
genomic: TCTGGGTGTTTATCTCCAAGAGATGGTTTCATGAGAGCGTGATGATTGTGgtaagcgtgt ... ctgcaaatagGTTGCGCGTGGCGACAAGACCGACGAGGATGGTGTGCCCATGCTGCTAAAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttggtggtatcctgaattttgctggttatagcatgttggtttcttctgcaaatagGTTGCGCGTGGCGACAAGACCGACGAGGATGGTGTGCCCATGCTGCTAAAAATCCCGCGAATGTTTGATCCATGGGGTGGATACAGCATCATTGGCTTTG
tttcttctgc CT-rich tract
tgaatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagcgtgtgaaaggggattctgctatttggtggtatcctgaattttgctggttatagcatgttggtttcttctgcaaatagGTTGCGCGTGGCGACAAGACCGACGAGGATGGTGTGCCCATGCTGCTAAAAATCCCGCGAATGTTTGATCCATGGGGTGGATACAGCATCATTGGCTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA