1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgtctacatttacgccccttttgacctgtaactactcacgttcataatgtcttattggttcgcgtcgtgacagGTCTCCCACCAAATTTACCGATTCGGCTTCCTAAACATGCGGATGAGGACGGCTACGCTGCTGAAGGAATTCCTCTCAGATCCGCTGCTGACGGTATTCC
species | Zea mays |
transcript | GRMZM2G164797_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATCCTTTCTGGAAACTTTTCTTCTTCACAAGACAAAGGATATGGTGGATG GTCTCCCACCAAATTTACCGATTCGGCTTCCTAAACATGCGGATGAGGACGEST: gi|211415280|gb|FL246624.1|FL246624
genomic: ATCCTTTCTGG-AACTTTTCTTCTTCACAAGACAAAGGATATGGTGGATGgtatgtctac ... gtcgtgacagGTCTCCCACCAAATTTACCGATTCGGCTTCCTAAACATGCGGATGAGGACG
EST: AATCCTTTCTGGAACTTTTCTTCTTCACAAGACAAAGGATATGGTGGATG GTCTCCCACCAAATTTACCGATTCGGCTTCCTAAACATGCGGATGAGGACGEST: gi|78120467|gb|DV538851.1|DV538851
genomic: AATCCTTTCTGGAACTTTTCTTCTTCACAAGACAAAGGATATGGTGGATGgtatgtctac ... gtcgtgacagGTCTCCCACCAAATTTACCGATTCGGCTTCCTAAACATGCGGATGAGGACG
EST: AATCCTTTCTGGAACTTTTCTTCTTCACAAGACAAAGGATATGGTGGATG GTCTCCCACCAAATTTACCGATTCGGCTTCCTAAACATGCGGATGAGGACGEST: gi|67026855|gb|CO455604.1|CO455604
genomic: AATCCTTTCTGGAACTTTTCTTCTTCACAAGACAAAGGATATGGTGGATGgtatgtctac ... gtcgtgacagGTCTCCCACCAAATTTACCGATTCGGCTTCCTAAACATGCGGATGAGGACG
EST: AATCCTTTCTGGAACTTTTCTTCTTCACAAGACAAAGGATATGGTGGATG GTCTCCCACCAAATTTACCGATTCGGCTTCCTAAACATGCGGATGAGGACGEST: gi|71301104|gb|DR786584.1|DR786584
genomic: AATCCTTTCTGGAACTTTTCTTCTTCACAAGACAAAGGATATGGTGGATGgtatgtctac ... gtcgtgacagGTCTCCCACCAAATTTACCGATTCGGCTTCCTAAACATGCGGATGAGGACG
EST: AATCCTTTCTGGAACTTTTCTTCTTCACAAGACAAAGGATATGGTGGATG GTCTCCCACCAAATTTACCGATTGGGCTTCTTAAACATGCGGATGAGGACGEST: gi|89760200|gb|DY688717.1|DY688717
genomic: AATCCTTTCTGGAACTTTTCTTCTTCACAAGACAAAGGATATGGTGGATGgtatgtctac ... gtcgtgacagGTCTCCCACCAAATTTACCGATTCGGCTTCCTAAACATGCGGATGAGGACG
EST: AATCCTTTCTGGAACTTTTCTTCTTCACAAGACAAAGGATATGGTGGATG GTCTCCCACCAAATTTACCGATTCGGCTTCCTAAACATGCGGATGAGGACG
genomic: AATCCTTTCTGGAACTTTTCTTCTTCACAAGACAAAGGATATGGTGGATGgtatgtctac ... gtcgtgacagGTCTCCCACCAAATTTACCGATTCGGCTTCCTAAACATGCGGATGAGGACG
ttttgacctgtaactactcacgttcataatgtcttattggttcgcgtcgtgacagGTCTCCCACCAAATTTACCGATTCGGCTTCCTAAACATGCGGATGAGGACGGCTACGCTGCTGAAGGAATTCCTCTCAGATCCGCTGCTGACGGTATTCC
tactcac putative branch site (score: 33)
ttcataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtctacatttacgccccttttgacctgtaactactcacgttcataatgtcttattggttcgcgtcgtgacagGTCTCCCACCAAATTTACCGATTCGGCTTCCTAAACATGCGGATGAGGACGGCTACGCTGCTGAAGGAATTCCTCTCAGATCCGCTGCTGACGGTATTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT