1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaggttttccctatttcattatttttgtattgctctatgcatctatggatcacttttgttgcttatccattatttccatttatatcccatattcaacattcattgtggcagAGGGGAACAGAAGACGCTATGTATTATTTGTCAAAAGAAGCCCATGATGGAAGAGTGAGGAGTGTTCTCTTTCTCATGCCTTGTCATTCAACACCTTACT
species | Zea mays |
transcript | GRMZM2G164175_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCGTCATAACCAACGTTCCCATGGCTTTATATATGTCCTTATTCCATCAA AGGGGAACAGAAGACGCTATGTATTATTTGTC-AAAGAAGCCCATGATGGAEST: gi|71427411|gb|DR808461.1|DR808461
genomic: TCGTCATAACCAACGTTCCCATGGCTTTATATATGTCCTTATTCCATCAAgtaggttttc ... attgtggcagAGGGGAACAGAAGACGCTATGTATTATTTGTCAAAAGAAGCCCATGATGGA
EST: TCGTCATAACCAACGTTCCCATGGCTTTATATATGTCCTTATTCCATCAA AGGGGAACAGAAGACGCTATGTATTATTTGTCAAAAGAAGCCCATGATGGAEST: gi|71314140|gb|DR793687.1|DR793687
genomic: TCGTCATAACCAACGTTCCCATGGCTTTATATATGTCCTTATTCCATCAAgtaggttttc ... attgtggcagAGGGGAACAGAAGACGCTATGTATTATTTGTCAAAAGAAGCCCATGATGGA
EST: TCGTCATAACCAACGTTCCCATGGCTTTATATATGTCCTTATTCCATCAA AGGGGAACAGAAGACGCTATGTATTATTTGTCAAAAGAAGCCCATGATGGAEST: gi|71764471|gb|DR962408.1|DR962408
genomic: TCGTCATAACCAACGTTCCCATGGCTTTATATATGTCCTTATTCCATCAAgtaggttttc ... attgtggcagAGGGGAACAGAAGACGCTATGTATTATTTGTCAAAAGAAGCCCATGATGGA
EST: TCGTCATAACCAACGTTCCCATGGCTTTATATATGTCCTTATTCCATCAA AGGGGAACAGAAGACGCTATGTATTATTTGTCAAAAGAAGCCCATGATGGAEST: gi|6654204|gb|AW267609.1|AW267609
genomic: TCGTCATAACCAACGTTCCCATGGCTTTATATATGTCCTTATTCCATCAAgtaggttttc ... attgtggcagAGGGGAACAGAAGACGCTATGTATTATTTGTCAAAAGAAGCCCATGATGGA
EST: GCTTTAGATATGTCCTTATTCCATCAA AGGGGAACAGAAGACGCTATGTATTATTTGTCAAAAGAAGCCCATGATGGAEST: gi|88748600|gb|DY532741.1|DY532741
genomic: GCTTTATATATGTCCTTATTCCATCAAgtaggttttc ... attgtggcagAGGGGAACAGAAGACGCTATGTATTATTTGTCAAAAGAAGCCCATGATGGA
EST: TCGTCATAACCAACGTTCCCATGGCTTTATATATGTCCTTATTCCATCAA AGGGGAACAGAAGACGCTATGTATTATTTGTCAAAAGAAGCCCATGATGGAEST: gi|76932561|gb|DV173073.1|DV173073
genomic: TCGTCATAACCAACGTTCCCATGGCTTTATATATGTCCTTATTCCATCAAgtaggttttc ... attgtggcagAGGGGAACAGAAGACGCTATGTATTATTTGTCAAAAGAAGCCCATGATGGA
EST: TCGTCATAACCAACGTTCCCATGGCTTTATATATGTCCTTATTCCATCAA AGGGGAACAGAAGACGCTATGTATTATTTGTCAAAAGAAGCCCATGATGGAEST: gi|148948729|gb|EC898651.2|EC898651
genomic: TCGTCATAACCAACGTTCCCATGGCTTTATATATGTCCTTATTCCATCAAgtaggttttc ... attgtggcagAGGGGAACAGAAGACGCTATGTATTATTTGTCAAAAGAAGCCCATGATGGA
EST: TCGTCATAACCAACGTTCCCATGGCTTTATATATGTCCTTATTCCATCAA AGGGGAACAGAAGACGCTATGTATTATTTGTCAAAAGAAGCCCATGATGGAEST: gi|37392942|gb|CF633725.1|CF633725
genomic: TCGTCATAACCAACGTTCCCATGGCTTTATATATGTCCTTATTCCATCAAgtaggttttc ... attgtggcagAGGGGAACAGAAGACGCTATGTATTATTTGTCAAAAGAAGCCCATGATGGA
EST: TCGTCATAACCAACGTTCCCATGGCTTTATATATGTCCTTATTCCATCAA AGGGGAACAGAAGACGCTATGTATTATTTGTC-AAAGAAGCCCATGATGGA
genomic: TCGTCATAACCAACGTTCCCATGGCTTTATATATGTCCTTATTCCATCAAgtaggttttc ... attgtggcagAGGGGAACAGAAGACGCTATGTATTATTTGTCAAAAGAAGCCCATGATGGA
tgttgcttatccattatttccatttatatcccatattcaacattcattgtggcagAGGGGAACAGAAGACGCTATGTATTATTTGTCAAAAGAAGCCCATGATGGAAGAGTGAGGAGTGTTCTCTTTCTCATGCCTTGTCATTCAACACCTTACT
attatttccatttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggttttccctatttcattatttttgtattgctctatgcatctatggatcacttttgttgcttatccattatttccatttatatcccatattcaacattcattgtggcagAGGGGAACAGAAGACGCTATGTATTATTTGTCAAAAGAAGCCCATGATGGAAGAGTGAGGAGTGTTCTCTTTCTCATGCCTTGTCATTCAACACCTTACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG