1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tctagagctaaaacgactactattttggaacggaaggagtatttttcttggatctgatatatacatggcacaattcttattgtgtgtttgattctcgcagAATGCCAATCCAGTTGGTTTACCCAACCCTCAATTGACTCAATCTCAGCAAAGCACCAGCATTGCTTCAGGGCCTCCACTCCCTCAGCATCTTCTTCATC
species | Zea mays |
transcript | GRMZM2G163888_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CAATGTCATCATCCATGAGCAATACAACTGTTTCTACGCAGCCCCAAGAG AATGCCAATCCAGTTGGTTTACCCAACCCTCAATTGACTCAATCTCAGCAAEST: gi|32850553|gb|CD990234.1|CD990234
genomic: CAATGTCATCATCCATGAGCAATACAACTGTTTCTACGCAGCCCCAAGAGgtatgaacat ... attctcgcagAATGCCAATCCAGTTGGTTTACCCAACCCTCAATTGACTCAATCTCAGCAA
EST: CAATGTCATCATCCATGAGCAATACAACTGTTTCTACGCAGCCCCAAGAG AATGCCAATCCAGTTAGTTTACCCAACCCTCAATTGACTCAATCTCAGCAAEST: gi|211270098|gb|FL340192.1|FL340192
genomic: CAATGTCATCATCCATGAGCAATACAACTGTTTCTACGCAGCCCCAAGAGgtatgaacat ... attctcgcagAATGCCAATCCAGTTGGTTTACCCAACCCTCAATTGACTCAATCTCAGCAA
EST: CAATGTCATCATCCATGAGCARWACAACTGTTTCTACACAGCCCCAAGAG AATGCCAATCCAGTTGGTTTACCCAACCCTCAATTGACTCAATCTCAGCAAEST: gi|95107690|gb|EB739919.1|EB739919
genomic: CAATGTCATCATCCATGAGCAATACAACTGTTTCTACGCAGCCCCAAGAGgtatgaacat ... attctcgcagAATGCCAATCCAGTTGGTTTACCCAACCCTCAATTGACTCAATCTCAGCAA
EST: CATGAGCAATACAACTGTTTCTACGCAGCCCCAAGAG AATGCCAATCCAGTTGGTTTACCCAACCCTCAATTGACTCAATCTCAGCAAEST: gi|32944594|gb|CF049413.1|CF049413
genomic: CATGAGCAATACAACTGTTTCTACGCAGCCCCAAGAGgtatgaacat ... attctcgcagAATGCCAATCCAGTTGGTTTACCCAACCCTCAATTGACTCAATCTCAGCAA
EST: CAATGTCATCATCCATGAGCAATACAACTGTTTCTACGCAGCCCCAAGAG AATGCCAATCCAGTTGGTTTACCCAACCCTCAATTGACTCAATCTCAGCAA
genomic: CAATGTCATCATCCATGAGCAATACAACTGTTTCTACGCAGCCCCAAGAGgtatgaacat ... attctcgcagAATGCCAATCCAGTTGGTTTACCCAACCCTCAATTGACTCAATCTCAGCAA
tcttggatctgatatatacatggcacaattcttattgtgtgtttgattctcgcagAATGCCAATCCAGTTGGTTTACCCAACCCTCAATTGACTCAATCTCAGCAAAGCACCAGCATTGCTTCAGGGCCTCCACTCCCTCAGCATCTTCTTCATC
ttctcgc CT-rich tract
atatatacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctagagctaaaacgactactattttggaacggaaggagtatttttcttggatctgatatatacatggcacaattcttattgtgtgtttgattctcgcagAATGCCAATCCAGTTGGTTTACCCAACCCTCAATTGACTCAATCTCAGCAAAGCACCAGCATTGCTTCAGGGCCTCCACTCCCTCAGCATCTTCTTCATC
- - - - - aaacgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgttt