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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgattgcttggccctaagcatctagaatggaaataccttggagaagagttgtctcattaggtgattagatcttagtagttcgattgttgacaacaggcataaactgtttcatctttcaaccctggaactaacttccacagctgtgttcctttttgttatttcttgtgcagCTCCTTTATGAAACTTGCCTCTGCATCTGGCTTTTATCATTTTATGATGCTGCAGTTGATTATTTGTCCACCACAAGAGTTATGCCAAGACTTGTTGAGG

Basic information

species Zea mays
transcript GRMZM2G163233_T01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G163233_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os07g36470.1 (Oryza sativa), 3'ss of exon 3
gtgattgcttggccctaagcatctagaatggaaataccttggagaagagttgtctcattaggtgattagatcttagtagttcgattgttgacaacaggcataaactgtttcatctttcaaccctggaactaacttccacagc--tgtgttcctttttgttatttcttgtgcagCTCCTTTATGAAACTTGCCTCTGCATCTGGCTTTTATCATTTTATGATGCTGCAGTTGATTATTTGTCCACCACAAGAGTTATGCCAAGACTTGTTGAGG
                                                                    |||  |    |  |       |||| ||  ||||| |||||   || || |      ||||||| || | || |  | || |     || || | || | ||||||| || || ||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| ||||| ||||||||||||||||| ||||
--------------------------------------------------------------------gattgt----gcacatacacggacatcaaacataa-ctgttctctcatttactttgtgaactaatttgctcaaccttctgcttacccttattgtgtcatttgcagCTTCTCTACGAAACTTGCCTCTGCATCTGGCTTTTATCCTTTTATGATGCAGCCGTTGATTATTTGTCCACTACAAGGGTTATGCCAAGACTTGTAGAGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaaccctggaactaacttccacagctgtgttcctttttgttatttcttgtgcagCTCCTTTATGAAACTTGCCTCTGCATCTGGCTTTTATCATTTTATGATGCTGCAGTTGATTATTTGTCCACCACAAGAGTTATGCCAAGACTTGTTGAGG
          aactaac  putative branch site (score: 1)
                            tgttcctttttgttat  putative PPT
                                  tttttgttatttctt  TA-rich tract