1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtacgcacccgacagttgattgattcagaactctttttctgttctaacgttccagtttaatgcgttcactggatccaattcttcttctgcagTGCATTGACAGGTGGCTCGGGATGAAGATATGGTGTCCGGTTTGCAAGTCAAATGTGTTCTCCCAGTAGGCCGTGAGCATCTCTTATACTTTTTGGAGCA
species | Zea mays |
transcript | GRMZM2G163159_T03 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTGGTGATTCACTCCGGCGTTTGCCATGCATGCACAAGTTTCACAAAGAG TGCATTGACAGGTGGCTCGGGATGAAGATATGGTGTCCGGTTTGCAAGTCAEST: gi|71760032|gb|DR957969.1|DR957969
genomic: CTGGTGATTCACTCCGGCGTTTGCCATGCATGCACAAGTTTCACAAAGAGgtacgcaccc ... tcttctgcagTGCATTGACAGGTGGCTCGGGATGAAGATATGGTGTCCGGTTTGCAAGTCA
EST: CTGGTGATTCACTCCGGCGTTTGCCATGCATGCACAAGTTTCACAAAGAG TGCATTGACAGGTGGCTCGGGATGAAGATATGGTGTCCGGTTTGCAAGTCAEST: gi|78093036|gb|DV521410.1|DV521410
genomic: CTGGTGATTCACTCCGGCGTTTGCCATGCATGCACAAGTTTCACAAAGAGgtacgcaccc ... tcttctgcagTGCATTGACAGGTGGCTCGGGATGAAGATATGGTGTCCGGTTTGCAAGTCA
EST: CTGGTGATTCACTCCGGCGTTTGCCATGCATGCACAAGTTTCACAAAGAG TGCATTGACAGGTGGCTCGGGATGAAGATATGGTGTCCGGTTTGCAAGTCAEST: gi|86473704|gb|DY240074.1|DY240074
genomic: CTGGTGATTCACTCCGGCGTTTGCCATGCATGCACAAGTTTCACAAAGAGgtacgcaccc ... tcttctgcagTGCATTGACAGGTGGCTCGGGATGAAGATATGGTGTCCGGTTTGCAAGTCA
EST: CTGGTGATTCACTCCGGCGTTTGCCATGCATGCACAAGTTTCACAAAGAG TGCATTGACAGGTGGCTCGGGATGAAGATATGGTGTCCGGTTTGCAAGTCAEST: gi|78122235|gb|DV540619.1|DV540619
genomic: CTGGTGATTCACTCCGGCGTTTGCCATGCATGCACAAGTTTCACAAAGAGgtacgcaccc ... tcttctgcagTGCATTGACAGGTGGCTCGGGATGAAGATATGGTGTCCGGTTTGCAAGTCA
EST: CTGGTGATTCACTCCGGCGTTTGCCATGCATGCACAAGTTTCACAAAGAG TGCATTGACAGGTGGCTCGGGATGAAGATATGGTGTCCGGTTTGCAAGTCAEST: gi|110214716|gb|EC896613.1|EC896613
genomic: CTGGTGATTCACTCCGGCGTTTGCCATGCATGCACAAGTTTCACAAAGAGgtacgcaccc ... tcttctgcagTGCATTGACAGGTGGCTCGGGATGAAGATATGGTGTCCGGTTTGCAAGTCA
EST: CTGGTGATTCACTCCGGCGTTTGCCATGCATGCACAAGTTTCACAAAGAG TGCATTGACAGGTGGCTCGGGATGAAGATATGGTGTCCGGTTTGCAAGTCAEST: gi|78108412|gb|DV526830.1|DV526830
genomic: CTGGTGATTCACTCCGGCGTTTGCCATGCATGCACAAGTTTCACAAAGAGgtacgcaccc ... tcttctgcagTGCATTGACAGGTGGCTCGGGATGAAGATATGGTGTCCGGTTTGCAAGTCA
EST: CTGGTGATTCACTCCGGCGTTTGCCATGCATGCACAAGTTTCACAAAGAG TGCATTGACAGGTGGCTCGGGATGAAGATATGGTGTCCGGTTTGCAAGTCAEST: gi|84970115|gb|DV171511.2|DV171511
genomic: CTGGTGATTCACTCCGGCGTTTGCCATGCATGCACAAGTTTCACAAAGAGgtacgcaccc ... tcttctgcagTGCATTGACAGGTGGCTCGGGATGAAGATATGGTGTCCGGTTTGCAAGTCA
EST: CTGGTGATTCACTCCGGCGTTTGCCATGCATGCACAAGTTTCACAAAGAG TGCATTGACAGGTGGCTCGGGATGAAGATATGGTGTCCGGTTTGCAAGTCA
genomic: CTGGTGATTCACTCCGGCGTTTGCCATGCATGCACAAGTTTCACAAAGAGgtacgcaccc ... tcttctgcagTGCATTGACAGGTGGCTCGGGATGAAGATATGGTGTCCGGTTTGCAAGTCA
tctgttctaacgttccagtttaatgcgttcactggatccaattcttcttctgcagTGCATTGACAGGTGGCTCGGGATGAAGATATGGTGTCCGGTTTGCAAGTCAAATGTGTTCTCCCAGTAGGCCGTGAGCATCTCTTATACTTTTTGGAGCA
tccaattcttcttct CT-rich tract
agtttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgcacccgacagttgattgattcagaactctttttctgttctaacgttccagtttaatgcgttcactggatccaattcttcttctgcagTGCATTGACAGGTGGCTCGGGATGAAGATATGGTGTCCGGTTTGCAAGTCAAATGTGTTCTCCCAGTAGGCCGTGAGCATCTCTTATACTTTTTGGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA