ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq
PPT, BS, UA-tract
cis-regulatory elements

Sequence

atgc intronic sequence ATGC exonic sequence

gtatagtagctactttttatatatagtttggtcgacataatccaatcgtttgctctgccctgacctgccttctgcgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGAAAGGCTCAACCAACTCAACTCCTCCGGTGGTGCTGATGACGACGATGAG

Basic information

species	Zea mays
transcript	GRMZM2G163081_T02
intron #	8
splice site	3'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G163081_T04 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os01g67126.1 (Oryza sativa), 3'ss of exon 8

gtatagta-gctactttttatatatagtttggtcgacataatccaatcgtttgctctgcc-ctgacctgccttctgcgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGAAAGGCTCAACCAACTCAACTCCTCCGGTGGTGCTGATGACGACGATGAG
||||| || |||   |  |   | | ||   |   |  |        | | |    ||   || || |||| |||   || | ||| ||||||| |||||||||||| || ||||||||||||||||| ||| | |||||  | ||    ||||||||||||| |||||||||||| || || |||
gtatattaagctggctgatgattttcgtaaagattatttgtgatgtccatgtatgatgtaactaacttgccatctctttgctgcagATACAACCTCAAGAAGCTGACCTACGAGCAGAGGAAGGCCAGTCTCGTCGAAAGATTGAATGCTCTCAACTCCTCCGCTGGTGCTGATGATGATGACGAG

upper sequence: GRMZM2G163081_T04 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA07G06590.1 (Glycine max), 3'ss of exon 8

--------------gtatagtagct----actttttatatatagtttggtcgacataatccaatcgtttgctctgccctgacctgccttctgcgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGAAAGGCTCAACCAACTCAACTCCTCCGGTGGTGCTGATGACGACGATGAG
               | ||| || |    | |  | |  ||   ||||||  | ||   |  |  |     | | ||      |  || |  | |  | ||||||||||   |||||||||||||||||| |||||||||| |   | |||  | |  |       ||||||||  | | || |  |||||| || ||||||
tgtttttgtttgacttttagaagttttggattggtaacgtagcttttggt--atatctactgaaaggagaatgttcctgagagtatctgcctctttctgcagGTACAACTTAAAGAAGCTGACATATGAGGAGAGGAAGGCTAAGTTGATTTCACGTGTGGCAGCTCTCAACTCTGCTGCTGATAATGATGAAGATGATGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|60395592|gb|DN228462.1|DN228462

EST:     GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAG                         GTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA
genomic: GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA

EST: gi|5005909|gb|AI711971.1|AI711971

EST:     GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAGG                         GTACAACCCCAAGAAGCTGACANTATGAGCAGAGGAAGGCCAGCCTCATT
genomic: GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGA-Ggtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACA-TATGAGCAGAGGAAGGCCAGCCTCATT

EST: gi|9952729|gb|BE639192.1|BE639192

EST:     GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAG                         GTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA
genomic: GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA

EST: gi|5740016|gb|AI947706.1|AI947706

EST:     GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAG                         GTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA
genomic: GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA

EST: gi|4647409|gb|AI622484.1|AI622484

EST:     GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAG                         GTACAACCCCAAGAAGCTGACATATGAGCAGAGAAAGGCCAGCCTCAT
genomic: GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCAT

EST: gi|113832212|gb|DW949450.1|DW949450

EST:     GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAG                         GTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTC
genomic: GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTC

EST: gi|28931030|gb|CB334391.1|CB334391

EST:     GATCCTTCCCTTGTTAAGTCAACCAAGCAGCCCCCAAAGGAGCATAAGAG                         GTACAACCCCCAGAAGCTGACATATGAGCCGAGGAAGGCCACCCTCATTGA
genomic: GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA

EST: gi|211089909|gb|FL386798.1|FL386798

EST:     CCACCAAAGGAGCATAAGAG                         GTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA
genomic: CCACCAAAGGAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA

EST: gi|32918160|gb|CF022972.1|CF022972

EST:     CACCAAAGGAGCATAAGAG                         GTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA
genomic: CACCAAAGGAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA

EST: gi|21331721|gb|BQ487102.1|BQ487102

EST:     GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAG                         GTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA
genomic: GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA

EST: gi|21331336|gb|BQ486717.1|BQ486717

EST:     GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAG                         GTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA
genomic: GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA

EST: gi|166513872|gb|EG153462.1|EG153462

EST:     TTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAG                         GTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA
genomic: TTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA

EST: gi|20507832|gb|BQ279785.1|BQ279785

EST:     GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAG                         GTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA
genomic: GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA

EST: gi|5525836|gb|AI861729.1|AI861729

EST:     GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAG                         GTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA
genomic: GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA

EST: gi|15215001|gb|BI431127.1|BI431127

EST:     GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAG                         GTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA
genomic: GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA

EST: gi|62525747|gb|DN828395.1|DN828395

EST:     GGAGCATAAGAG                         GTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA
genomic: GGAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA

EST: gi|8665574|gb|BE186390.1|BE186390

EST:     CACCAAAGGAGCATAAGAG                         GTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA
genomic: CACCAAAGGAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA

EST: gi|211227267|gb|FL248872.1|FL248872

EST:     GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAG                         GTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA
genomic: GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA

EST: gi|5069678|gb|AI737643.1|AI737643

EST:     GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAG                         GTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA
genomic: GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA

EST: gi|60342490|gb|DN209463.1|DN209463

EST:     GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAG                         GTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA
genomic: GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA

EST: gi|78027543|gb|DV495930.1|DV495930

EST:     GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAG                         GTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA
genomic: GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA

EST: gi|211452553|gb|FL415482.1|FL415482

EST:     GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAG                         GTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA
genomic: GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA

EST: gi|6431740|gb|AW171944.1|AW171944

EST:     GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAG                         GTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA
genomic: GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA

EST: gi|37393800|gb|CF634166.1|CF634166

EST:     AGTCAACCAAGCAGCCACCAAAGGAGCATAAGAG                         GTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA
genomic: AGTCAACCAAGCAGCCACCAAAGGAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA

EST: gi|21843317|gb|BQ703898.1|BQ703898

EST:     GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAG                         GTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA
genomic: GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA

EST: gi|5901231|gb|AW042331.1|AW042331

EST:     GATCCTTCCATTGGTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAG                         GTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA
genomic: GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA

EST: gi|21626094|gb|BQ621015.1|BQ621015

EST:     GATCCTTCCGTTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAG                         GTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA
genomic: GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA

EST: gi|8665273|gb|BE186089.1|BE186089

EST:     CACCAAAGGAGCATAAGAG                         GTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA
genomic: CACCAAAGGAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA

EST: gi|29544966|gb|CB605144.1|CB605144

EST:     GAGCATAAGAG                         GTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA
genomic: GAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA

EST: gi|6031510|gb|AW076412.1|AW076412

EST:     GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAG                         GTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA
genomic: GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA

EST: gi|21759943|gb|BQ635484.1|BQ635484

EST:     GATCCTTCCATTGTTAAGTCAACCAAGCAGCCCCCAAAGGAGCATAAGAG                         GTACAACCCCCAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA
genomic: GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA

EST: gi|87155751|gb|DY400540.1|DY400540

EST:     GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAG                         GTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA
genomic: GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA

EST: gi|7304475|gb|AW600414.1|AW600414

EST:     GATCCTTCCCTTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAAAG                         GTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA
genomic: GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA

EST: gi|166469643|gb|EG298825.1|EG298825

EST:     GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAG                         GTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCC
genomic: GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCC

EST: gi|166493987|gb|EG154445.1|EG154445

EST:     TCAACCAAGCAGCCACCAAAGGAGCATAAGAG                         GTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA
genomic: TCAACCAAGCAGCCACCAAAGGAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA

EST: gi|211339276|gb|FL413180.1|FL413180

EST:     GTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAG                         GTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA
genomic: GTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA

EST: gi|6431776|gb|AW171980.1|AW171980

EST:     GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAG                         GTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA
genomic: GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA

EST: gi|21809867|gb|BQ668185.1|BQ668185

EST:     GATCCTTCCATTGTTAAGTCGACCAAGCAGCCACCAAAGGAGCATAAGAG                         GTACGACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA
genomic: GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA

EST: gi|6681810|gb|AW287797.1|AW287797

EST:     GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAG                         GTNCAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA
genomic: GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA

EST: gi|9730966|gb|BE509718.1|BE509718

EST:     GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAG                         GTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA
genomic: GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA

EST: gi|33100593|gb|CF060553.1|CF060553

EST:     GATCCTTCCGTTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAG                         GTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA
genomic: GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA

EST: gi|166561687|gb|EG288660.1|EG288660

EST:     CATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAG                         GTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTAA
genomic: CATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA

EST: gi|5871632|gb|AW018103.1|AW018103

EST:     GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAG                         GTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA
genomic: GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA

EST: gi|28576085|gb|CB281977.1|CB281977

EST:     GATCCTTCCATTGTTAAGTCAACCAAGCAGCCCCCAAAGGAGCATAAGAG                         GTACACCCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA
genomic: GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA

EST: gi|60349542|gb|DN216515.1|DN216515

EST:     GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAG                         GTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA
genomic: GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA

EST: gi|21828574|gb|BQ703258.1|BQ703258

EST:     GATCCTTCCATTGTTAAGTCAACCAAGCAGCCCCCAAAGGAGCATAAGAG                         GTACCACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA
genomic: GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA

EST: gi|5124367|gb|AI746103.1|AI746103

EST:     GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAG                         GTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA
genomic: GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA

EST: gi|60351790|gb|DN218763.1|DN218763

EST:     GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAG                         GTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA
genomic: GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA

EST: gi|15082660|gb|BI389344.1|BI389344

EST:     GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAG                         GTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA
genomic: GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA

EST: gi|5439294|gb|AI820215.1|AI820215

EST:     GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAG                         GTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA
genomic: GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA

EST: gi|14364844|gb|BG946655.1|BG946655

EST:     CTTCCATTGTTAAGTCAACCAAGCAGCCCCCAAAGGAGCATAAGAG                         GTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA
genomic: CTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA

EST: gi|67024339|gb|CO453088.1|CO453088

EST:     GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAG                         GTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA
genomic: GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA

EST: gi|4572889|gb|AI586538.1|AI586538

EST:     GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAG                         GTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA
genomic: GATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 2458

CTGATGAAATAGAAGCGCTGTACAAGAAGGTCCATGCTGCCATCCGTGCCGATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAGgtatagtagc ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGAAAGGCTCAACCAACTCAACTCCTCCGGTGGTGCTGATGACGACGATGAG

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 975

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 639

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1108

atgc intronic sequence ATGC exonic sequence

Intronic sequence truncated to 55 bases.

ggtcgacataatccaatcgtttgctctgccctgacctgccttctgcgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGAAAGGCTCAACCAACTCAACTCCTCCGGTGGTGCTGATGACGACGATGAG

                            ccctgac  putative branch site (score: 1108)
                                      ccttctgc  putative PPT
     acataat  TA-rich tract

Putative cis-regulatory sequences

atgc	intron	ATGC	exonic elements by Pertea et al.
ATGC	exon	atgc	putative intronic elements
		ATGC	putative exonic elements identified for retained introns

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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatagtagctactttttatatatagtttggtcgacataatccaatcgtttgctctgccctgacctgccttctgcgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGAAAGGCTCAACCAACTCAACTCCTCCGGTGGTGCTGATGACGACGATGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT