1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgatggcacgtttgttacagaacgagtaaccacctattctattttgtctattattgattacttcttcttctttttttcttgcaccattcttactttacagTCGTACCACCGAGAACTGTTGGAACAGAGGCAGTCTGCCTTACGAAGATGGCCTCCCCAGCGGTCTCCCGTCGCGCGCTTCCAACCTAGAAAGATGCTTC
species | Zea mays |
transcript | GRMZM2G162884_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AAAGGCGTGATTTTGTTGTTCAG TCGTACCACCGAGAACTGTTGGAACAGAGGCAGTCTGCCTTACGAAGATGGEST: gi|211270768|gb|FL475768.1|FL475768
genomic: AAAGGCGTGATTTTGTTGTTCAGgtattttcag ... tactttacagTCGTACCACCGAGAACTGTTGGAACAGAGGCAGTCTGCCTTACGAAGATGG
EST: GGACTGCAGACATGTTCCTGGATTGTGAAAGGCGTGATTTTGTTGTTCAG TCGTACCACCGAGAACTGTTGGAACAGAGGCAGTCTGCCTTACGAAGATGGEST: gi|211270769|gb|FL475769.1|FL475769
genomic: GGACTGCAGACATGTTCCTGGATTGTGAAAGGCGTGATTTTGTTGTTCAGgtattttcag ... tactttacagTCGTACCACCGAGAACTGTTGGAACAGAGGCAGTCTGCCTTACGAAGATGG
EST: AGACATGTTCCTGGATTGTGAAAGGCGTGATTTTGTTGTTCAG TCGTACCACCGAGAACTGTTGGAACAGAGGCAGTCTGCCTTACGAAGATGG
genomic: AGACATGTTCCTGGATTGTGAAAGGCGTGATTTTGTTGTTCAGgtattttcag ... tactttacagTCGTACCACCGAGAACTGTTGGAACAGAGGCAGTCTGCCTTACGAAGATGG
gtctattattgattacttcttcttctttttttcttgcaccattcttactttacagTCGTACCACCGAGAACTGTTGGAACAGAGGCAGTCTGCCTTACGAAGATGGCCTCCCCAGCGGTCTCCCGTCGCGCGCTTCCAACCTAGAAAGATGCTTC
ttcttac putative branch site (score: 25)
ttacttcttcttcttt CT-rich tract
ttattgatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatggcacgtttgttacagaacgagtaaccacctattctattttgtctattattgattacttcttcttctttttttcttgcaccattcttactttacagTCGTACCACCGAGAACTGTTGGAACAGAGGCAGTCTGCCTTACGAAGATGGCCTCCCCAGCGGTCTCCCGTCGCGCGCTTCCAACCTAGAAAGATGCTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
tgatggc
- - - - - - - - - - - - - -aaccacc