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gtacttgagcgtttcttctttattactgattctctttgaaaaatacttccttgagatgcaacatgccttttaattgaaagatgctcacaaaaacctcatcataaatttcagCTCAAGCAGAATGGATGGATTGGGAACTTCGCTCTGGGTGCGAGTTACATCAGCTTGCCCTG
species | Zea mays |
transcript | GRMZM2G162672_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTGTGGGTGGCTCCTTACTTTCTTACATATATTCAGCACCACCTCTCAAG CTCAAGCAGAATGGATGGATTGGGAACTTCGCTCTGGGTGCGAGTTACATCEST: gi|211379068|gb|FL028409.1|FL028409
genomic: CTGTGGGTGGCTCCTTACTTTCTTACATATATTCAGCACCACCTCTCAAGgtacttgagc ... taaatttcagCTCAAGCAGAATGGATGGATTGGGAACTTCGCTCTGGGTGCGAGTTACATC
EST: CTGTGGGTGGCTCCTTACTTTCTTACATATATTCAGCACCACCTCTCAAG CTCAAGCAGAATGGATGGAEST: gi|211036106|gb|FL230098.1|FL230098
genomic: CTGTGGGTGGCTCCTTACTTTCTTACATATATTCAGCACCACCTCTCAAGgtacttgagc ... taaatttcagCTCAAGCAGAATGGATGGA
EST: CCTTACTTTCTTACATATATTCAGCACCACCTCTCAAG CTCAAGCAGAATGGATGGATTGGGAACTTCGCTCTGGGTGCGAGTTACATCEST: gi|61119511|gb|DN560472.1|DN560472
genomic: CCTTACTTTCTTACATATATTCAGCACCACCTCTCAAGgtacttgagc ... taaatttcagCTCAAGCAGAATGGATGGATTGGGAACTTCGCTCTGGGTGCGAGTTACATC
EST: CTGTGGGTGGCTCCTTACTTTCTTACATATATTCAGCACCACCTCTCAAG CTCAAGCAGAATGGATGGATTGGGAACTTCGCTCTGGGTGCGAGTTACATCEST: gi|78120047|gb|DV538431.1|DV538431
genomic: CTGTGGGTGGCTCCTTACTTTCTTACATATATTCAGCACCACCTCTCAAGgtacttgagc ... taaatttcagCTCAAGCAGAATGGATGGATTGGGAACTTCGCTCTGGGTGCGAGTTACATC
EST: CTGTGGGTGGCTCCTTACTTTCTTACATATATTCAGCACCACCTCTCAAG CTCAAGCAGAATGGATGGATTGGGAACTTCGCTCTGGGTGCGAGTTACATCEST: gi|149080582|gb|EE169625.2|EE169625
genomic: CTGTGGGTGGCTCCTTACTTTCTTACATATATTCAGCACCACCTCTCAAGgtacttgagc ... taaatttcagCTCAAGCAGAATGGATGGATTGGGAACTTCGCTCTGGGTGCGAGTTACATC
EST: CTGTGGGTGGCTCCTTACTTTCTTACATATATTCAGCACCACCTCTCAAG CTCAAGCAGAATGGATGGATTGGGAACTTCGCTCTGGGTGCGAGTTACATC
genomic: CTGTGGGTGGCTCCTTACTTTCTTACATATATTCAGCACCACCTCTCAAGgtacttgagc ... taaatttcagCTCAAGCAGAATGGATGGATTGGGAACTTCGCTCTGGGTGCGAGTTACATC
tgcaacatgccttttaattgaaagatgctcacaaaaacctcatcataaatttcagCTCAAGCAGAATGGATGGATTGGGAACTTCGCTCTGGGTGCGAGTTACATCAGCTTGCCCTG
tgctcac putative branch site (score: 2)
ttttaattgaaagat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttgagcgtttcttctttattactgattctctttgaaaaatacttccttgagatgcaacatgccttttaattgaaagatgctcacaaaaacctcatcataaatttcagCTCAAGCAGAATGGATGGATTGGGAACTTCGCTCTGGGTGCGAGTTACATCAGCTTGCCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT