1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gctggctattagcgacatgaaagtaatacacataatatctatgtccaggaagtgtatgaccatgatatgttctcagctgatgatatcatgggtgaagcagAGATAGATCTCCAGCCAATG
species | Zea mays |
transcript | GRMZM2G161728_T04 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATGAAGTGCTTAAGATATCTGTTCCTCGAAATTATGGACCTCTAAAACTT AGATAGATCTCCAGCCAATG
genomic: ATGAAGTGCTTAAGATATCTGTTCCTCGAAATTATGGACCTCTAAAACTTgtaagtttta ... ggtgaagcagAGATAGATCTCCAGCCAATG
caggaagtgtatgaccatgatatgttctcagctgatgatatcatgggtgaagcagAGATAGATCTCCAGCCAATG
agctgat putative branch site (score: 100)
atgatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctggctattagcgacatgaaagtaatacacataatatctatgtccaggaagtgtatgaccatgatatgttctcagctgatgatatcatgggtgaagcagAGATAGATCTCCAGCCAATG
- - - - - - - -catgaaa
- - - - - - - - - - - - - -acacata
- - - - - - - - - - - - - - - - - - - - - - - - - -gtgtatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgatg