1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtaagcacttactttcattcatctataatgactgcgtgcagtttatttgaacagtcttcacttcctgtcttattattttctttaacctttcgtgcctggatctatgtacttcattcttgtggaatctttatgcagATAGCTGTAGCATCAGCAAACAAAAGTGGTACAATAAGCTTTCGAGAGTTGAACCAAAAGAAATACCGCACGCCTCTAATT
species | Zea mays |
transcript | GRMZM2G160430_T04 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTCTGAGGGGATTTGATGCTGACATCACTGAAGAAGTGAATGATATAAAG ATAGCTGTAGCATCAGCAAACAAAAGTGGTEST: gi|32929449|gb|CF034261.1|CF034261
genomic: TTCTGAGGGGATTTGATGCTGACATCACTGAAGAAGTGAATGATATAAAGgtaagcactt ... ctttatgcagATAGCTGTAGCATCAGCAAACAAAAGTGGT
EST: TTCTGAGGGGATTTGATGCTGACATCACTGAAGAAGTGAATGATATAAAG ATAGCTGTAGCATCAGCAAACAAAAGTGGTEST: gi|32834892|gb|CD974570.1|CD974570
genomic: TTCTGAGGGGATTTGATGCTGACATCACTGAAGAAGTGAATGATATAAAGgtaagcactt ... ctttatgcagATAGCTGTAGCATCAGCAAACAAAAGTGGT
EST: TTCTGAGGGGATTTGATGCTGACATCACTGAAGAAGTGAATGATATAAAG ATAGCTGTAGCATCAGCAAACAAAAGTGGT
genomic: TTCTGAGGGGATTTGATGCTGACATCACTGAAGAAGTGAATGATATAAAGgtaagcactt ... ctttatgcagATAGCTGTAGCATCAGCAAACAAAAGTGGT
tttaacctttcgtgcctggatctatgtacttcattcttgtggaatctttatgcagATAGCTGTAGCATCAGCAAACAAAAGTGGTACAATAAGCTTTCGAGAGTTGAACCAAAAGAAATACCGCACGCCTCTAATT
ctttaac putative branch site (score: 68)
tctttat putative PPT
aatctttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcacttactttcattcatctataatgactgcgtgcagtttatttgaacagtcttcacttcctgtcttattattttctttaacctttcgtgcctggatctatgtacttcattcttgtggaatctttatgcagATAGCTGTAGCATCAGCAAACAAAAGTGGTACAATAAGCTTTCGAGAGTTGAACCAAAAGAAATACCGCACGCCTCTAATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA