Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactttcttccaccttcccctacactatgcttgcaagctactcgattgatttaacattcttattatgtaggcagtgccattgtcaaattacaagtactaactattttgcttctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTCTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG

Basic information

species Zea mays
transcript GRMZM2G159369_T02
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G159369_T01 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os05g06430.2 (Oryza sativa), 3'ss of exon 9
gtactttcttccaccttcccctacactatgcttgcaagctactcgattgatttaacattcttattatgtaggcagtgccattgtcaaattacaagtactaactattttgcttctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTCTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG
                             |     ||  | |     || ||| | ||| || |||||||||   || ||| ||||   |   | |  |||| ||||||||   ||| |||| | |||||||| |||||||   |||||||||||||||| || ||||||||||| ||||||||||||||  ||||||||||||| |||||| ||||||||
-----------------------------gtactaaattttcatctctgtttttaaatt-ttgttatgtaggtt-tggcatcgtcactgtgtgaat-ttaaccattttgct---aaagcagGTACGGAAAGATCTATGTGAACTCTGCAAAGAAGATCATGGAGAAGGGCTCTGAATACACTAAGAAGGAATCTGAGAGGCTTCAACGCATGTTGGAGAAG

upper sequence: GRMZM2G159369_T01 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os05g06430.1 (Oryza sativa), 3'ss of exon 9
gtactttcttccaccttcccctacactatgcttgcaagctactcgattgatttaacattcttattatgtaggcagtgccattgtcaaattacaagtactaactattttgcttctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTCTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG
                             |     ||  | |     || ||| | ||| || |||||||||   || ||| ||||   |   | |  |||| ||||||||   ||| |||| | |||||||| |||||||   |||||||||||||||| || ||||||||||| ||||||||||||||  ||||||||||||| |||||| |||||   
-----------------------------gtactaaattttcatctctgtttttaaatt-ttgttatgtaggtt-tggcatcgtcactgtgtgaat-ttaaccattttgct---aaagCAGGTACGGAAAGATCTATGTGAACTCTGCAAAGAAGATCATGGAGAAGGGCTCTGAATACACTAAGAAGGAATCTGAGAGGCTTCAACGCATGTTGGAG---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60400615|gb|DN233422.1|DN233422
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|60349176|gb|DN216149.1|DN216149
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|32945558|gb|CF050377.1|CF050377
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|33101695|gb|CF061655.1|CF061655
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|18177252|gb|BM378462.1|BM378462
EST:     CTCTCTAAAATAGAAGAGGATGTTGTTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|50323733|gb|CO518859.1|CO518859
EST:     CTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|5901141|gb|AW042241.1|AW042241
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|6865233|gb|AW360583.1|AW360583
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGNCAGCTGCAAAGAAGATCATAGGCAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|148932685|gb|EC876639.2|EC876639
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|86466435|gb|DY232805.1|DY232805
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|4647206|gb|AI622281.1|AI622281
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|32857597|gb|CD997278.1|CD997278
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|6227253|gb|AW155852.1|AW155852
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|211059073|gb|FL239922.1|FL239922
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCRAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|37380832|gb|CF627255.1|CF627255
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGTAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|60399092|gb|DN231906.1|DN231906
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|211474733|gb|FL432049.1|FL432049
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|78084676|gb|DV513069.1|DV513069
EST:     GCTAAGCTCAGCGTTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: GCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|32867151|gb|CF006833.1|CF006833
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|24767522|gb|CA402664.1|CA402664
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|21809934|gb|BQ668252.1|BQ668252
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|4646531|gb|AI491677.2|AI491677
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|37379835|gb|CF626683.1|CF626683
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|32940600|gb|CF045419.1|CF045419
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|78545093|gb|DV622591.1|DV622591
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|20513042|gb|BQ280228.1|BQ280228
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|31558598|gb|CD527810.1|CD527810
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|60350336|gb|DN217309.1|DN217309
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|33091270|gb|CF051264.1|CF051264
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|211059072|gb|FL239921.1|FL239921
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|60356885|gb|DN223858.1|DN223858
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|148961931|gb|EE012723.2|EE012723
EST:     CTCTTTAAAATAGAAGAGGATGTTGCTAAGTTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|6022466|gb|AW067499.1|AW067499
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|37388199|gb|CF631306.1|CF631306
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|101386448|gb|EB815241.1|EB815241
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|71326463|gb|DR799911.1|DR799911
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|14244876|gb|BG842814.2|BG842814
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|24763724|gb|CA398895.1|CA398895
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|60343927|gb|DN210900.1|DN210900
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|32934912|gb|CF039724.1|CF039724
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|9254367|gb|BE344835.1|BE344835
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|149096331|gb|EE182050.2|EE182050
EST:     CTCTCTAAAATAGAAGAGGATGTTGTTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|67024988|gb|CO453737.1|CO453737
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|14244939|gb|BG842877.2|BG842877
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|21828690|gb|BQ703374.1|BQ703374
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|6102035|gb|AW126505.1|AW126505
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|37397302|gb|CF635947.1|CF635947
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|60358667|gb|DN225640.1|DN225640
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|32862901|gb|CF002583.1|CF002583
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtaggcagtgccattgtcaaattacaagtactaactattttgcttctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTCTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG
                                      ttttgcttct  CT-rich tract
                                taactatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA