Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgttgcgccatatagatgcatactgccttttatttttcgaccattcagtttctaaatacattttggtttttcttctttcgcaatgcagCTTGATAACCACCGTAATCAGTTGATTCAG

Basic information

species Zea mays
transcript GRMZM2G159295_T02
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G159295_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os03g53110.1 (Oryza sativa), 3'ss of exon 8
gtaatgttgcgccatatagatgcatactgccttttatttttcgaccattcagtttctaaatacattttggtttttcttctttcgcaatgcagCTTGATAACCACCGTAATCAGTTGATTCAG
||||  || | | ||   |||  |  |||         |   || | || | | |    |  ||  |   |   |||          |||||||||| ||||||||||||||||| ||||||
gtaacatttccctat---gatata-gctgtgcacggcatgctgatcttttaatcttggcactcacctcattacctctc--------gtgcagCTTGACAACCACCGTAATCAGTTAATTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88748706|gb|DY532847.1|DY532847
EST:     TTGAGAGAGTACATCGATGACACGGAAGATTACATCAATATCCAG                         CTTGATAACCACCGTAATCAGTTGATTCAG
genomic: TTGAGAGAGTACATCGATGACACGGAAGATTACATCAATATCCAGgtaatgttgc ... cgcaatgcagCTTGATAACCACCGTAATCAGTTGATTCAG
EST: gi|76291165|gb|DV030733.1|DV030733
EST:     TTGAGAGAGTACATCGATGACACGGAAGATTACATCAATATCCAG                         CTTGATAACCACCGTAATCAGTTGATTCAG
genomic: TTGAGAGAGTACATCGATGACACGGAAGATTACATCAATATCCAGgtaatgttgc ... cgcaatgcagCTTGATAACCACCGTAATCAGTTGATTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttcgaccattcagtttctaaatacattttggtttttcttctttcgcaatgcagCTTGATAACCACCGTAATCAGTTGATTCAG
                ttctaaa  putative branch site (score: 2)
                         cattttggtttttctt  putative PPT
               tttctaaatacatttt  TA-rich tract