1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaatgactatcgtactacttattgtttatggcactatgtttcacctagaacgcatgtgattgtgatgacttggttgcctctacagATGCTTTGCGAGGATAGAGGAATCTTCTTGGAGATAGCTGATTTCATCAAAGGACTAGGACTGACTATCTTGAGGGGTGTGATGGAAATGCGCAAAAGTA
species | Zea mays |
transcript | GRMZM2G158281_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTCCAATCATTGTTGAGGATCTTGACCGACCTCGTCAGATGCTTGTGGAG ATGCTTTGCGAGGATAGAGGAATCTTCTTGGAGATAGCTGATTTCATCAAAEST: gi|60395454|gb|DN228324.1|DN228324
genomic: GTCCAATCATTGTTGAGGATCTTGACCGACCTCGTCAGATGCTTGTGGAGgtaatgacta ... gcctctacagATGCTTTGCGAGGATAGAGGAATCTTCTTGGAGATAGCTGATTTCATCAAA
EST: GTCCAATCATTGTTGAGGATCTTGACCGACCTCGTCAGATGCTTGTGGAG ATGCTTTGCGAGGATAGAGGAATCTTCTTGGAGATAGCTGATTTCATCAAAEST: gi|87155891|gb|DY400680.1|DY400680
genomic: GTCCAATCATTGTTGAGGATCTTGACCGACCTCGTCAGATGCTTGTGGAGgtaatgacta ... gcctctacagATGCTTTGCGAGGATAGAGGAATCTTCTTGGAGATAGCTGATTTCATCAAA
EST: CATTGTTGAGGATCTTGACCGACCTCGTCAGATGCTTGTGGAG ATGCTTTGCGAGGATAGAGGAATCTTCTTGGAGATAGCTGATTTCATCAAAEST: gi|60350023|gb|DN216996.1|DN216996
genomic: CATTGTTGAGGATCTTGACCGACCTCGTCAGATGCTTGTGGAGgtaatgacta ... gcctctacagATGCTTTGCGAGGATAGAGGAATCTTCTTGGAGATAGCTGATTTCATCAAA
EST: TTGACCGACCTCGTCAGATGCTTGTGGAG ATGCTTTGCGAGGATAGAGGAATCTTCTTGGAGATAGCTGATTTCATCAAAEST: gi|60353077|gb|DN220050.1|DN220050
genomic: TTGACCGACCTCGTCAGATGCTTGTGGAGgtaatgacta ... gcctctacagATGCTTTGCGAGGATAGAGGAATCTTCTTGGAGATAGCTGATTTCATCAAA
EST: TTGACCGACCTCGTCAGATGCTTGTGGAG ATGCTTTGCGAGGATAGAGGAATCTTCTTGGAGATAGCTGATTTCATCAAA
genomic: TTGACCGACCTCGTCAGATGCTTGTGGAGgtaatgacta ... gcctctacagATGCTTTGCGAGGATAGAGGAATCTTCTTGGAGATAGCTGATTTCATCAAA
gcactatgtttcacctagaacgcatgtgattgtgatgacttggttgcctctacagATGCTTTGCGAGGATAGAGGAATCTTCTTGGAGATAGCTGATTTCATCAAAGGACTAGGACTGACTATCTTGAGGGGTGTGATGGAAATGCGCAAAAGTA
ttgcctct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgactatcgtactacttattgtttatggcactatgtttcacctagaacgcatgtgattgtgatgacttggttgcctctacagATGCTTTGCGAGGATAGAGGAATCTTCTTGGAGATAGCTGATTTCATCAAAGGACTAGGACTGACTATCTTGAGGGGTGTGATGGAAATGCGCAAAAGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA