1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cattaccacccctcccaacagctgctgaaaatacatcttgagtttgtggtactgcttcattggagtagcattgattctgttgtaatttgtgttctaacagCTGCTGAAAGAAAAGGGTCTCTTGCCTGATATGTCACGCCAAATTGATGACATTGTCTTCCCTTTGGACGAAGAACTTGAAGGACCAGCATCCAGTATTG
species | Zea mays |
transcript | GRMZM2G158228_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AAGATATACCGGCTCGTGGCTTTGGATTTGGAGACGCTGTTATAGTGGAA CTGCTGAAAGAAAAGGGTCTCTTGCCTGATATGTCACGCCAAATTGATGACEST: gi|40335023|gb|CK369093.1|CK369093
genomic: AAGATATACCGGCTTGTGGCTTTGGATTTGGAGACGCTGTTATAGTGGAAgtatgacatg ... gttctaacagCTGCTGAAAGAAAAGGGTCTCTTGCCTGATATGTCACGCCAAATTGATGAC
EST: AAGATATACCGGCTTGTGGATTTGGATTTGGAGATGCTGTTATAGTGGAA CTGCTGAAAGAAAAGGGTCTCTTGCCTGATATGTCACGCCAAATTGATGACEST: gi|110525484|gb|EE029668.1|EE029668
genomic: AAGATATACCGGCTTGTGGCTTTGGATTTGGAGACGCTGTTATAGTGGAAgtatgacatg ... gttctaacagCTGCTGAAAGAAAAGGGTCTCTTGCCTGATATGTCACGCCAAATTGATGAC
EST: AAGATATACCGGCTTGTGGCTTTGGATTTGGAGACGCTGTTATAGTGGAA CTGCTGAAAGAAAAGGGTCTCTTGCCTGATATGTCACGCCAAATTGATGACEST: gi|32165040|gb|CD670358.1|CD670358
genomic: AAGATATACCGGCTTGTGGCTTTGGATTTGGAGACGCTGTTATAGTGGAAgtatgacatg ... gttctaacagCTGCTGAAAGAAAAGGGTCTCTTGCCTGATATGTCACGCCAAATTGATGAC
EST: CGGCTTGTGGCTTTGGATTTGGAGACGCTGTTATAGTGGAA CTGCTGAAAGAAAAGGGTCTCTTGCCTGATATGTCACGCCAAATTGATGACEST: gi|37380182|gb|CF626875.1|CF626875
genomic: CGGCTTGTGGCTTTGGATTTGGAGACGCTGTTATAGTGGAAgtatgacatg ... gttctaacagCTGCTGAAAGAAAAGGGTCTCTTGCCTGATATGTCACGCCAAATTGATGAC
EST: AAGATATACCGGCTTGTGGATTTGGATTTGGAGATGCTGTTATAGTGGAA CTGCTGAAAGAAAAGGGTCTCTTGCCTGATATGTCACGCCAAATTGATGACEST: gi|76910389|gb|DV163841.1|DV163841
genomic: AAGATATACCGGCTTGTGGCTTTGGATTTGGAGACGCTGTTATAGTGGAAgtatgacatg ... gttctaacagCTGCTGAAAGAAAAGGGTCTCTTGCCTGATATGTCACGCCAAATTGATGAC
EST: AAGATATACCGGCTTGTGGCTTTGGATTTGGAGACGCTGTTATAGTGGAA CTGCTGAAAGAAAAGGGTCTCTTGCCTGATATGTCACGCCAAATTGATGACEST: gi|33091456|gb|CF051450.1|CF051450
genomic: AAGATATACCGGCTTGTGGCTTTGGATTTGGAGACGCTGTTATAGTGGAAgtatgacatg ... gttctaacagCTGCTGAAAGAAAAGGGTCTCTTGCCTGATATGTCACGCCAAATTGATGAC
EST: AAGATATACCGGCTTGTGGATTTGGATTTGGAGATGCTGTTATAGTGGAA CTGCTGAAAGAAAAGGGTCTCTTGCCTGATATGTCACGCCAAATTGATGAC
genomic: AAGATATACCGGCTTGTGGCTTTGGATTTGGAGACGCTGTTATAGTGGAAgtatgacatg ... gttctaacagCTGCTGAAAGAAAAGGGTCTCTTGCCTGATATGTCACGCCAAATTGATGAC
gtggtactgcttcattggagtagcattgattctgttgtaatttgtgttctaacagCTGCTGAAAGAAAAGGGTCTCTTGCCTGATATGTCACGCCAAATTGATGACATTGTCTTCCCTTTGGACGAAGAACTTGAAGGACCAGCATCCAGTATTG
cattgat putative branch site (score: 49)
ttgtaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cattaccacccctcccaacagctgctgaaaatacatcttgagtttgtggtactgcttcattggagtagcattgattctgttgtaatttgtgttctaacagCTGCTGAAAGAAAAGGGTCTCTTGCCTGATATGTCACGCCAAATTGATGACATTGTCTTCCCTTTGGACGAAGAACTTGAAGGACCAGCATCCAGTATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- -taccacc
- - - - - - -cccaaca
- - - - - - - - - - gctgctg
- - - - - - - - - - - - - - aaataca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agtagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgttgt