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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattatgagggagagatagttcttcaattgtactcttcagacttcttttataccatattcttcaccaatatcacattagctttgttgctttcttggcagcttacttataattgtttctattcacattgcagAGCAGACACTGGGACACCTTCTATAAATTCTACCGTAACACAACTGATAATCA

Basic information

species Zea mays
transcript GRMZM2G158097_T02
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G158097_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os04g36062.1 (Oryza sativa), 3'ss of exon 8
gtaattat--gagggagagatagttcttcaattgtactcttcagacttcttttataccat-----attctt-------cacca--atatcacattagctttgttgctttctt--------------ggca------------gcttacttataattgtttctattcacattgcagAGCAGACACTGGGACACCTTCTATAAATTCTACCGTAACACAACTGATAATCA
||  | ||   | | |   ||  ||||     || ||| |      ||  ||||   |||     || |||       || ||  |||||   || | |||| |  |||  |              ||||              | |||||| ||  ||| | ||  | |||||||||   || ||||||||||| ||||| |||||||| |||||||||||||||||
gtgctcattttatgaatgaatgattctgtggctgcactatattcgttttctttacttcatcgaatatgctttagttaacatcagcatatcctctttgatttgctatttttctttacattttgagaaggcacttacatattccattcacttatcatgatttttctttgctttgcagAGCGAGCATTGGGACACCTTTTATAAGTTCTACCGCAACACAACTGATAATCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32841147|gb|CD980828.1|CD980828
EST:     TTCCTGCCCAAAATTTGCAAATGAAGCGACTTCGTGGAGACGAAATAAAG                         AGCAGACACTGGGACACCTTCTATAAATTCTACCGTAACACAACTGATAAT
genomic: TTCCTGCCCAAAATTTGCAAATGAAGCGACTTCGTGGAGACGAAATAAAGgtaattatga ... cacattgcagAGCAGACACTGGGACACCTTCTATAAATTCTACCGTAACACAACTGATAAT
EST: gi|32840869|gb|CD980550.1|CD980550
EST:     TTCCTGCCCAAAATTTGCAAATGAAGCGACTTCGTGGAGACGAAATAAAG                         AGCAGACACTGGGACACCTTCTATAAATTCTACCGTAACACAACTGATAAT
genomic: TTCCTGCCCAAAATTTGCAAATGAAGCGACTTCGTGGAGACGAAATAAAGgtaattatga ... cacattgcagAGCAGACACTGGGACACCTTCTATAAATTCTACCGTAACACAACTGATAAT
EST: gi|13389377|gb|BG462692.1|BG462692
EST:     TTCCTGCCCAAAATTTGCAAATGAAGCGACTTCGTGGAGACGAAATAAAG                         AGCAGATTTTTTGACACCTTCTATAAATTCTACCGTAACACAACTGATAAT
genomic: TTCCTGCCCAAAATTTGCAAATGAAGCGACTTCGTGGAGACGAAATAAAGgtaattatga ... cacattgcagAGCAGACACTGGGACACCTTCTATAAATTCTACCGTAACACAACTGATAAT
EST: gi|32841581|gb|CD981262.1|CD981262
EST:     TTCCTGCCCAAAATTTGCAAATGAAGCGACTTCGTGGAGACGAAATAAAG                         AGCAGACACTGGGACACCTTCTATAAATTCTACCGTAACACAACTGATAAT
genomic: TTCCTGCCCAAAATTTGCAAATGAAGCGACTTCGTGGAGACGAAATAAAGgtaattatga ... cacattgcagAGCAGACACTGGGACACCTTCTATAAATTCTACCGTAACACAACTGATAAT
EST: gi|32841639|gb|CD981320.1|CD981320
EST:     TTCCTGCCCAAAATTTGCAAATGAAGCGACTTCGTGGAGACGAAATAAAG                         AGCAGACACTGGGACACCTTCTATAAATTCTACCGTAACACAACTGATAAT
genomic: TTCCTGCCCAAAATTTGCAAATGAAGCGACTTCGTGGAGACGAAATAAAGgtaattatga ... cacattgcagAGCAGACACTGGGACACCTTCTATAAATTCTACCGTAACACAACTGATAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagctttgttgctttcttggcagcttacttataattgtttctattcacattgcagAGCAGACACTGGGACACCTTCTATAAATTCTACCGTAACACAACTGATAATCA
                     agcttac  putative branch site (score: 3)
                                     tttctattc  putative PPT
                        ttacttataattgttt  TA-rich tract