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...atgttttcagccgaggggatgtgttttggtgtaggcagctgttcttttttgatttttttctttggattctaaccatgaactatattttgtggtgctacagCCGGCTGCAATGTTTAAGGTGTTGCGCACGGACCCACCAATTCCAGATAACCTGTCCCCTGAAGGGAAGGATTTTCTGAGATGCTGCTTCAAGAGAAACC
species | Zea mays |
transcript | GRMZM2G156800_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CAATCATTGAGATGTTTACAGGAAAGCCACCTTGGAGTGGTCTTGAAGGG CCGGCTGCAATGTTTAAGGTGTTGCGCACGGACCCACCAATTCCAGATAACEST: gi|22542085|gb|BU092523.1|BU092523
genomic: CAATCATTGAGATGTTTACAGGAAAGCCACCTTGGAGTGGTCTTGAAGGGgtatgtaatc ... ggtgctacagCCGGCTGCAATGTTTAAGGTGTTGCGCACGGACCCACCAATTCCAGATAAC
EST: CAATCATTGAGATGCTTACAGGAAAGCCACCTTGGAGTGGTCTTGAAGGG CCGGCTGCAATGTTTAAGGCGTTGCGCACGGACCCACCAATTCCAGATAACEST: gi|60345120|gb|DN212093.1|DN212093
genomic: CAATCATTGAGATGTTTACAGGAAAGCCACCTTGGAGTGGTCTTGAAGGGgtatgtaatc ... ggtgctacagCCGGCTGCAATGTTTAAGGTGTTGCGCACGGACCCACCAATTCCAGATAAC
EST: CAATCATTGAGATGTTTACAGGAAAGCCACCTTGGAGTGGTCTTGAAGGG CCGGCTGCAATGTTTAAGGTGTTGCGCACGGACCCACCAATTCCAGATAACEST: gi|87157200|gb|DY401989.1|DY401989
genomic: CAATCATTGAGATGTTTACAGGAAAGCCACCTTGGAGTGGTCTTGAAGGGgtatgtaatc ... ggtgctacagCCGGCTGCAATGTTTAAGGTGTTGCGCACGGACCCACCAATTCCAGATAAC
EST: CAATCATTGAGATGTTTACAGGAAAGCCACCTTGGAGTGGTCTTGAAGGG CCGGCTGCAATGTTTAAGGTGTTGCGCACGGACCCACCAATTCCAGATAACEST: gi|26558715|gb|CA830950.1|CA830950
genomic: CAATCATTGAGATGTTTACAGGAAAGCCACCTTGGAGTGGTCTTGAAGGGgtatgtaatc ... ggtgctacagCCGGCTGCAATGTTTAAGGTGTTGCGCACGGACCCACCAATTCCAGATAAC
EST: CAATCATTGAGATGTTTACAGGAAAGCCACCTTGGAGTGGTCTTGAAGGG CCGGCTGCAATGTTTAAGGTGTTGCGCACGGACCCACCAATTCCAGATAACEST: gi|6031429|gb|AW076331.1|AW076331
genomic: CAATCATTGAGATGTTTACAGGAAAGCCACCTTGGAGTGGTCTTGAAGGGgtatgtaatc ... ggtgctacagCCGGCTGCAATGTTTAAGGTGTTGCGCACGGACCCACCAATTCCAGATAAC
EST: CAATCATTGAGATGTTTACAGGAAAGCCACCTTGGAGTGGTCTTGAAGGG CCGGCTGCAATGTTTAAGGTGTTGCGCACGGACCCACCAATTCCAGATAACEST: gi|211321744|gb|FL182473.1|FL182473
genomic: CAATCATTGAGATGTTTACAGGAAAGCCACCTTGGAGTGGTCTTGAAGGGgtatgtaatc ... ggtgctacagCCGGCTGCAATGTTTAAGGTGTTGCGCACGGACCCACCAATTCCAGATAAC
EST: CAATCATTGAGATGTTTACAGGAAAGCCACCTTGGAGTGGTCTTGAAGGG CCGGCTGCAATGTTTAAGGTGTTGCGCACGTACCCACCAATTCCAGATAACEST: gi|211321747|gb|FL182476.1|FL182476
genomic: CAATCATTGAGATGTTTACAGGAAAGCCACCTTGGAGTGGTCTTGAAGGGgtatgtaatc ... ggtgctacagCCGGCTGCAATGTTTAAGGTGTTGCGCACGGACCCACCAATTCCAGATAAC
EST: CAATCATTGAGATGTTTACAGGAAAGCCACCTTGGAGTGGTCTTGAAGGG CCGGCTGCAATGTTTAAGGTGTTGCGCACGTACCCACCAATTCCAGATAAC
genomic: CAATCATTGAGATGTTTACAGGAAAGCCACCTTGGAGTGGTCTTGAAGGGgtatgtaatc ... ggtgctacagCCGGCTGCAATGTTTAAGGTGTTGCGCACGGACCCACCAATTCCAGATAAC
tttttgatttttttctttggattctaaccatgaactatattttgtggtgctacagCCGGCTGCAATGTTTAAGGTGTTGCGCACGGACCCACCAATTCCAGATAACCTGTCCCCTGAAGGGAAGGATTTTCTGAGATGCTGCTTCAAGAGAAACC
ttctaac putative branch site (score: 1)
atgaactatatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgttttcagccgaggggatgtgttttggtgtaggcagctgttcttttttgatttttttctttggattctaaccatgaactatattttgtggtgctacagCCGGCTGCAATGTTTAAGGTGTTGCGCACGGACCCACCAATTCCAGATAACCTGTCCCCTGAAGGGAAGGATTTTCTGAGATGCTGCTTCAAGAGAAACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA