Sequence
atgc intronic sequence ATGC exonic sequencegtgagtcatataattgtgtaccttgccaaaagaaaggaaaataaaagaaaaatgtgtggattcatcaagaaatttatttgcacatgtagGTTGGTCTGCCAGCTGATAGAGAACAGTATATACATAGACTCGGAAGGACTGGACGGAAAGGCAAGGAAGGGCAAGGCATCTTACTACTGGCTCCCTGGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G156158_T02 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA07G06240.1 (Glycine max), 3'ss of exon 8
gtgagtcatat-aattgtgtaccttgccaaaagaaaggaa---------aataaaagaaaaatgtgtggattcatcaagaaatttatttg-cacatg--tagGTTGGTCTGCCAGCTGATAGAGAACAGTATATACATAGACTCGGAAGGACTGGACGGAAAGGCAAGGAAGGGCAAGGCATCTTACTACTGGCTCCCTGGG
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-ctgtttgcatcgactcggtagaaagttaaaacaaataggctattatttgatcaaaagtaattattttgtttc-ttgtttcctccacttgtcaaatggacagGTTGGTTTGCCAGCAGATAGAGAACAGTATATACATAGACTCGGTAGAACAGGGCGAAGAGGGAAAGAAGGGCAGGGCATACTGCTGCTGGCTCCTTGGG
upper sequence: GRMZM2G156158_T02 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA16G02880.1 (Glycine max), 3'ss of exon 8
-----gtgagtcatataattgtgtaccttgccaaaagaaaggaaaataaaagaaaaatgtgtgg---attcatcaagaaatttatttg-cacatg--tagGTTGGTCTGCCAGCTGATAGAGAACAGTATATACATAGACTCGGAAGGACTGGACGGAAAGGCAAGGAAGGGCAAGGCATCTTACTACTGGCTCCCTGGG
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tttgctgaaattaaacacctgttggcatcggagagaagttaaaacattgatcaaaagtaattgttttgtttcttatttcctccacttgtcaaatggacagGTTGGTTTGCCAGCAGATAGAGAACAGTATATACATCGACTCGGTAGAACAGGGCGAAGAGGGAAAGAAGGGCAGGGCATACTGCTACTGGCTCCTTGGG
upper sequence: GRMZM2G156158_T02 (Zea mays), 3'ss of exon 8
lower sequence: AT5G08620.1 (Arabidopsis thaliana), 3'ss of exon 8
gtgagtcatataattgtgtaccttgccaaaa--gaaaggaaaata-aaagaaaaatgtgtggattcatcaagaaatttatt----------tgcacatgtagGTTGGTCTGCCAGCTGATAGAGAACAGTATATACATAGACTCGGAAGGACTGGACGGAAAGGCAAGGAAGGGCAAGGCATCTTACTACTGGCTCCCTGGG
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gtaaatcatgtagtagttttcaatcatggaattgaacagtatctacaaagttgattgtttttttttaccgaagttgttgttgtgtgtatgttgcttttgcagATGGGATTGCCATCAGACAGGGAACAATATATACATAGACTTGGCAGAACTGGGCGGAAAGGTAAGGAAGGAGAAGGTGTACTATTGTTGGCACCGTGGG
upper sequence: GRMZM2G156158_T02 (Zea mays), 3'ss of exon 8
lower sequence: AT5G08610.1 (Arabidopsis thaliana), 3'ss of exon 8
gtgagtcatataattgt-gtaccttgccaaaagaaaggaaaataaaagaaaaatgtgtggattca---tcaagaaatttatttgcacatgtagGTTGGTCTGCCAGCTGATAGAGAACAGTATATACATAGACTCGGAAGGACTGGACGGAAAGGCAAGGAAGGGCAAGGCATCTTACTACTGGCTCCCTGGG
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---------gtaaccatagttttctgacatggaattgttctgcgactacaaattttatctcttttgtttaactgaagttgtttgcttttgcagATGGGATTGCCATCAGACAGGGAGCAGTATATACATAGACTTGGCAGAACCGGGCGGAAAGGGAAGGAAGGGGAAGGAGTCTTATTGTTGGCACCATGGG
upper sequence: GRMZM2G156158_T02 (Zea mays), 3'ss of exon 8
lower sequence: Vv15s0046g01010.t01 (Vitis vinifera), 3'ss of exon 9
----gtgagtcatataattgtgtaccttgccaaaagaaaggaaaataaa-----agaaaaatgtgtggattcatcaagaaatt---tatttgcacatgtagGTTGGTCTGCCAGCTGATAGAGAACAGTATATACATAGACTCGGAAGGACTGGACGGAAAGGCAAGGAAGGGCAAGGCATCTTACTACTGGCTCCCTGGG
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ttgaacttgctttata-ctgtggatttagtataaagatttgagaatatttcttcagaccgctatgggcttgaacctagaaaatatatttctgtaatttcagGTCGGTTTGCCATCTGATAAAGAACAGTATATACATCGACTTGGTAGAACTGGGCGTAAGGGTAAAGAAGGGCAAGGCATATTGTTACTGGCACCTTGGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aggaaaataaaagaaaaatgtgtggattcatcaagaaatttatttgcacatgtagGTTGGTCTGCCAGCTGATAGAGAACAGTATATACATAGACTCGGAAGGACTGGACGGAAAGGCAAGGAAGGGCAAGGCATCTTACTACTGGCTCCCTGGG
aataaaagaaaaatgt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagtcatataattgtgtaccttgccaaaagaaaggaaaataaaagaaaaatgtgtggattcatcaagaaatttatttgcacatgtagGTTGGTCTGCCAGCTGATAGAGAACAGTATATACATAGACTCGGAAGGACTGGACGGAAAGGCAAGGAAGGGCAAGGCATCTTACTACTGGCTCCCTGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA