1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...actaaaaagacaaatattgtgaaatggtggtagtagtgcactactttgtgctgtggcatcactatacttgctctaaagccaagatgcattactttaacagGTTTATGTCAAATACAGTGCTCTTTTCCGCATAACAAGAGAAGCATATCCATATGAAGACACTGCTCAGCTTCTTTCCAGTGTGATATCTCATTATGGAG
species | Zea mays |
transcript | GRMZM2G155962_T03 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AAGAAGAGAAGGCATTCTCTTCATTTCTAAGCTTATCCAGATTCCCACAG GTTTATGTCAAATACAGTGCTCTTTTCCGCATAACAAGAGAAGCATATCCAEST: gi|60397566|gb|DN230382.1|DN230382
genomic: AAGAAGAGAAGGCATTCTCTTCATTTCTAAGCTTATCCAGATTCCCACAGgtaatgtatg ... actttaacagGTTTATGTCAAATACAGTGCTCTTTTCCGCATAACAAGAGAAGCATATCCA
EST: AAGAAGAGAAGGCATTCTCTTCATTTCTAAGCTTATCCAGATTCCCACAG GTTTATGTCAAATACAGTGCTCTTTTCEST: gi|76909087|gb|DV163216.1|DV163216
genomic: AAGAAGAGAAGGCATTCTCTTCATTTCTAAGCTTATCCAGATTCCCACAGgtaatgtatg ... actttaacagGTTTATGTCAAATACAGTGCTCTTTTC
EST: AAGAAGAGAAGGCATTCTCTTCATTTTTAAGCTTATCCAGATTCCCACAG GTTTATGTCAAATACAGTGCTCTTTTCCGCATAACAAGAGAAGCATATCCAEST: gi|101390398|gb|EB817133.1|EB817133
genomic: AAGAAGAGAAGGCATTCTCTTCATTTCTAAGCTTATCCAGATTCCCACAGgtaatgtatg ... actttaacagGTTTATGTCAAATACAGTGCTCTTTTCCGCATAACAAGAGAAGCATATCCA
EST: AAGAAGAGAAGGCATTCTCTTCATTTCTAAGCTTATCCAGATTCCCACAG GTTTATGTCAAATACAGTGCTCTTTTCCGCATAACAAGAGAAGCATATCCAEST: gi|88748896|gb|DY533037.1|DY533037
genomic: AAGAAGAGAAGGCATTCTCTTCATTTCTAAGCTTATCCAGATTCCCACAGgtaatgtatg ... actttaacagGTTTATGTCAAATACAGTGCTCTTTTCCGCATAACAAGAGAAGCATATCCA
EST: AAGAAGAGAAGGCATTCTTTTCATTTTTAAGCTTATCCAGATTCCCACAG GTTTATGTCAAATACAGTGCTCTTTTCCGCATAACAAGAGAAGCATATCCAEST: gi|78090807|gb|DV519181.1|DV519181
genomic: AAGAAGAGAAGGCATTCTCTTCATTTCTAAGCTTATCCAGATTCCCACAGgtaatgtatg ... actttaacagGTTTATGTCAAATACAGTGCTCTTTTCCGCATAACAAGAGAAGCATATCCA
EST: AAGAAGAGAAGGCATTCTCTTCATTTCTAAGCTTATCCAGATTCCCACAG GTTTATGTCAAATACAGTGCTCTTTTCTGCATAACAAGAGAAGCATATCCAEST: gi|76909089|gb|DV163217.1|DV163217
genomic: AAGAAGAGAAGGCATTCTCTTCATTTCTAAGCTTATCCAGATTCCCACAGgtaatgtatg ... actttaacagGTTTATGTCAAATACAGTGCTCTTTTCCGCATAACAAGAGAAGCATATCCA
EST: AAGAAGAGAAGGCATTCTCTTCATTTCTAAGCTTATCCAGATTCCCACAG GGTTATGTCNAATACAGTGCTCTTTEST: gi|60357568|gb|DN224541.1|DN224541
genomic: AAGAAGAGAAGGCATTCTCTTCATTTCTAAGCTTATCCAGATTCCCACAGgtaatgtatg ... actttaacagGTTTATGTCAAATACAGTGCTCTTT
EST: AAGAAGAGAAGGCATTCTCTTCATTTCTAAGCTTATCCAGATTCCCACAG GTTTATGTCAAATACAGTGCTCTTTTC
genomic: AAGAAGAGAAGGCATTCTCTTCATTTCTAAGCTTATCCAGATTCCCACAGgtaatgtatg ... actttaacagGTTTATGTCAAATACAGTGCTCTTTTC
ttgtgctgtggcatcactatacttgctctaaagccaagatgcattactttaacagGTTTATGTCAAATACAGTGCTCTTTTCCGCATAACAAGAGAAGCATATCCATATGAAGACACTGCTCAGCTTCTTTCCAGTGTGATATCTCATTATGGAG
ctctaaa putative branch site (score: 3)
ttacttt putative PPT
attactttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actaaaaagacaaatattgtgaaatggtggtagtagtgcactactttgtgctgtggcatcactatacttgctctaaagccaagatgcattactttaacagGTTTATGTCAAATACAGTGCTCTTTTCCGCATAACAAGAGAAGCATATCCATATGAAGACACTGCTCAGCTTCTTTCCAGTGTGATATCTCATTATGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- -aaaaaga
- - - - - - - - - -tgaaatg
- - - - - - - - - - - - - - - - - - -gcactac
- - - - - - - - - - - - - - - - - - - - - - - -gtgctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgcatt