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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaagttagaaaataaattctagatattgagttatgcactaaaacatttatatctaatatgcattttttatgcatctttatgacttccagAGCAGTGAAACTCAAGCAACGACAGAACCATGAAAAGTTGATATCTGGGAAAAGCTTTGCGCTTCATCCTGGTCAAAAATATTATTTGGTTCCTTCATCT

Basic information

species Zea mays
transcript GRMZM2G154621_T03
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|160481616|gb|EY254448.1|EY254448
EST:     GCCGAGGAAATGTCTGATGTTGCTTTTGTGGAGGTTAATCTTAG                         AGCAGTGAAACTCAAGCAACGACAGAACCATGAAAAGTTGATATCTGGGAA
genomic: GCCGA-GAATTGTCTGATGTTGCTTCTGTGGAGGTTAATCTTAGgtatgaagtt ... tgacttccagAGCAGTGAAACTCAAGCAACGACAGAACCATGAAAAGTTGATATCTGGGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcactaaaacatttatatctaatatgcattttttatgcatctttatgacttccagAGCAGTGAAACTCAAGCAACGACAGAACCATGAAAAGTTGATATCTGGGAAAAGCTTTGCGCTTCATCCTGGTCAAAAATATTATTTGGTTCCTTCATCT
                                       tctttat  CT-rich tract
     aaaacatttatatcta  TA-rich tract